Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 371 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  452 bits (1163), Expect = e-132
 Identities = 238/369 (64%), Positives = 286/369 (77%), Gaps = 5/369 (1%)

Query: 2   RLRPAAIVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQS 61
           RL   A++ C LP AL ACG+ +P  DPR   P+V+A +VQ A   +RSF+G V AR +S
Sbjct: 5   RLLSFAVI-CALPFALAACGEKTPS-DPRTQAPLVRAATVQGAGVESRSFTGTVAARVES 62

Query: 62  DLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDE 121
           DLGFRVSGK+L+RLVD GQTVKRGQPLMR+DPVDL L AR QQE V AARARA QT +DE
Sbjct: 63  DLGFRVSGKVLERLVDAGQTVKRGQPLMRLDPVDLELAARTQQETVAAARARALQTTEDE 122

Query: 122 ARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMD 181
           ARYRGL   GA+S+S+YDQ+KAAADAAKAQLSAAQAQADVARNA+ YAVL+AD DG+VM+
Sbjct: 123 ARYRGLRGTGAISSSAYDQVKAAADAAKAQLSAAQAQADVARNASRYAVLVADGDGIVME 182

Query: 182 TLAEPGQVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATLFGKPAQAVPAKLRL 241
           TLAEPGQVV+AGQ VVRLA+AGQREAV+ LPETLRPA GST LAT FGK   ++PA LR 
Sbjct: 183 TLAEPGQVVNAGQTVVRLAQAGQREAVIQLPETLRPALGSTGLATRFGKEGVSIPATLRQ 242

Query: 242 LSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAK-QIPIGALFDPGNGA 300
           LS+ AD +TRTFEARYVL G LA+ PLGAT+T++IPD     + + Q+P+G+LFD G G 
Sbjct: 243 LSNTADRLTRTFEARYVLEGELAATPLGATVTIQIPDAQAATQGRLQVPLGSLFDAGKGP 302

Query: 301 GVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDG--VEVMEQAQ 358
           GVWVI G+PAKV+WR V +  + D+ A V   +  G+RIVALGAHLLR+G  V V   A 
Sbjct: 303 GVWVIHGEPAKVAWRPVAIQHMGDDAARVTGQIQQGERIVALGAHLLREGEQVRVASAAT 362

Query: 359 TAQVMGHQP 367
           +  V G +P
Sbjct: 363 STAVGGGRP 371