Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 363 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  140 bits (352), Expect = 7e-38
 Identities = 109/352 (30%), Positives = 167/352 (47%), Gaps = 10/352 (2%)

Query: 5   PAAIVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLG 64
           P AIV     LA +A  D     +P   P  V + +    SA   S +G V  R  S L 
Sbjct: 11  PLAIV-----LASIAGCDDKAAVNP--APRYVLSATALKESAGGMSLAGTVQPRVTSALS 63

Query: 65  FRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARY 124
           F+ +G+++ R V+ G  VK GQ L R+DP+ L    ++ Q +V  A+A+ +       R 
Sbjct: 64  FQATGRVVSRYVEVGDEVKAGQVLARLDPLALAFAVQSAQASVQDAQAKLQNAVITAKRQ 123

Query: 125 RGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLA 184
           R L A    S  S ++ + +  AA+A +  AQA+   A     YA L A  DGV+     
Sbjct: 124 RSLAAVNVTSVESLEEAEQSLTAAQAAVDVAQARRRKASEQLNYAELKAHFDGVITSVSV 183

Query: 185 EPGQVVSAGQAVVRLARAGQREAVVYLPET-LRPAP-GSTALATLFGKPAQAVPAKLRLL 242
           E GQ V+AGQAV+++A  G+R+AVV LPE+ L+    G      L   PA     +LR +
Sbjct: 184 ETGQTVAAGQAVLQIAYLGERDAVVDLPESQLKDVTLGHRFEVALQMDPAVKWTGELREI 243

Query: 243 SDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGV 302
           + AAD  TR    +  +     +  LG  +T+         +   +P  A+ +      V
Sbjct: 244 APAADAATRMRRVKIAIHDAPEAFRLGTVVTVSPLMARNTDKPLVVPATAILERQQAHFV 303

Query: 303 WVIAGQPAKVSWRAVEVLSVSDEKAV-VKSDLHAGDRIVALGAHLLRDGVEV 353
           WVI      VS R ++++  S   +V V   L  G++IV  G + L+ G ++
Sbjct: 304 WVINPSSLTVSLREIQLMPASQADSVRVLGGLQEGEQIVIAGVNSLQPGQKI 355