Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 356 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  138 bits (348), Expect = 2e-37
 Identities = 106/346 (30%), Positives = 166/346 (47%), Gaps = 9/346 (2%)

Query: 15  LALVACGDSSPGKDPRDTPPVVKAVSVQDASALARS-FSGVVVARTQSDLGFRVSGKILQ 73
           +AL  C        P   P  VKA+ VQ       +  SG V AR Q+DL FR  G+++ 
Sbjct: 14  IALTGCDGQKQALTPPPQP--VKALQVQKVRYQNEAQISGEVTARFQADLAFRTEGRVIA 71

Query: 74  RLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAV 133
           RLVD G  V++GQ L R+D ++        Q  + +ARA  +      +R + L+   A+
Sbjct: 72  RLVDVGSRVQKGQVLARLDDIEKKADVDVAQATLHSARATLQLKQRIFSRDQKLLTIHAI 131

Query: 134 SASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAG 193
           S + +DQ +    +A+A + +AQ+  D A++A  Y  L +DADGV++    E GQVV++ 
Sbjct: 132 SQAEWDQAREDLSSAQAGVVSAQSSLDTAKDALTYTELKSDADGVIVSRQLEVGQVVASA 191

Query: 194 QAVVRLARAGQREAVVYLPET--LRPAPG-STALATLFGKPAQAVPAKLRLLSDAADPIT 250
           Q V+ LA  G R+AV  +PE   L   PG   ++  +  +  +A+ AK+R ++   +  +
Sbjct: 192 QTVLTLAHDGPRDAVFDVPEAILLNEHPGDDISVRLISARDGEALTAKVREIAPMLNEAS 251

Query: 251 RTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQPA 310
            T + +  L    A  PLGA++   I     +     +P GAL        VWVI     
Sbjct: 252 GTVQVKTTLP-VSAQWPLGASVVGNI--VVNEQPGILLPPGALTSHQGKPAVWVIEEGKD 308

Query: 311 KVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQ 356
            VS   + V     +  VV + L  G  +V  G+  L  G  V  +
Sbjct: 309 TVSLHEISVARYRSQDVVVTAGLTPGAWVVTEGSKFLIAGQHVSRE 354