Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 384 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  164 bits (415), Expect = 4e-45
 Identities = 118/357 (33%), Positives = 177/357 (49%), Gaps = 14/357 (3%)

Query: 3   LRPAAIVGCLLPLALVACGDSSPGKDPRDTPPVVKAVSVQDASALARS----FSGVVVAR 58
           L+ A + G L  LA  +C +        + P VV+ V V +  A        +SG V AR
Sbjct: 13  LKIAVVAGALSLLA--SCSEEKKA----EAPDVVRPVKVAEIGAPDEGRKLIYSGAVKAR 66

Query: 59  TQSDLGFRVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTG 118
           T+ +LGF VSGKI +RLV+ G  V  G  L R+DPVD  L     +  +++AR + + T 
Sbjct: 67  TEMNLGFHVSGKITERLVNVGDHVSPGAVLARLDPVDYKLAVTRAEADLSSARKQVEITD 126

Query: 119 DDEARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGV 178
               R + L A  A S S+ +Q   + D A +   +A++  + ARN   Y+ L +D  G+
Sbjct: 127 LAYRRAQTLAAQNATSQSALEQASLSRDQAVSSRQSAESALEQARNQVAYSDLKSDQKGI 186

Query: 179 VMDTLAEPGQVVSAGQAVVRLARAGQREAVVYLPE--TLRPAPGSTALATLFGKPAQAVP 236
           V    A+ GQVVSAG  VV +A  G++E  + +PE       PG    A+ +      + 
Sbjct: 187 VTTVSADVGQVVSAGTPVVTVAVDGEKEVQIAVPEMDVSHFQPGKQVSASFWAANTIVLT 246

Query: 237 AKLRLLSDAADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDP 296
            K+R ++ +ADP +RTF  R  L        LG T T+E    D    A  +P+ AL + 
Sbjct: 247 GKVREVAQSADPQSRTFSVRVSLPED-QRVLLGMTATIE-AKADNAVPAFSVPLAALGEK 304

Query: 297 GNGAGVWVIAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353
                VWV+  Q   VS R VEV+  SD+ A +   L  G  +V+ G   +R+ ++V
Sbjct: 305 DGKKVVWVVDRQKGTVSSRPVEVVDFSDDGARISKGLSTGVLVVSAGTQFMREDMKV 361