Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 369 a.a., multidrug efflux protein from Agrobacterium fabrum C58

 Score =  318 bits (815), Expect = 1e-91
 Identities = 175/336 (52%), Positives = 232/336 (69%), Gaps = 6/336 (1%)

Query: 28  DPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQRLVDTGQTVKRGQP 87
           DPR   P+V    V+  +  +RSF+G V AR QSDLGFRV GKI++RLV  G+ VK GQP
Sbjct: 36  DPRSLAPLVSVTKVKTPNTASRSFTGTVAARVQSDLGFRVPGKIVERLVGLGEEVKAGQP 95

Query: 88  LMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAVSASSYDQIKAAADA 147
           LMR+D  DL L   A++ AV AA+A   Q   DE R+  LV   A S   Y++ KA  D 
Sbjct: 96  LMRIDETDLRLALTAKRNAVVAAQATFIQAQADEKRFAVLVKSNAASTQQYERSKATLDT 155

Query: 148 AKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAGQAVVRLARAGQREA 207
           A AQL+AA+A A VA N   YA+L+ADADG +++TLAEPGQVVSAGQ V+RLA+AG REA
Sbjct: 156 ATAQLAAARADATVAENEAAYALLVADADGTIVETLAEPGQVVSAGQPVIRLAKAGPREA 215

Query: 208 VVYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSDAADPITRTFEARYVLTGPLASAP 267
           +V+LPE LRP  G+ ALA ++G+  Q   A LR +S+AADP TRT+E R+VL G  A+AP
Sbjct: 216 LVWLPENLRPEIGAVALAAVYGRNRQE-KAALRQISNAADPQTRTYETRWVLQGAAATAP 274

Query: 268 LGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQPAKVSWRAVEVLSVSDEKA 327
           LGAT+T+ + + D    A ++P+GAL D G+  GVWV+  Q + V ++AV+V  + ++KA
Sbjct: 275 LGATVTISVENKDALSHA-EVPVGALLDNGDRTGVWVVDEQSSSVHFQAVKVERIGEDKA 333

Query: 328 VVKSDLHAGDRIVALGAHLLRDGVEV---MEQAQTA 360
           VV S L AG+ +VALGAHLL+DG  V   +E+A+ A
Sbjct: 334 VV-SSLRAGETVVALGAHLLQDGASVRVGVEKAEAA 368