Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  153 bits (387), Expect = 6e-42
 Identities = 122/355 (34%), Positives = 174/355 (49%), Gaps = 20/355 (5%)

Query: 16  ALVACG-DSSPGKDPRDTPPVVKAVS--VQDASALARSFSGVVVARTQSDLGFRVSGKIL 72
           AL +C  +  P + P  T  VV A    V   S +    +G V AR Q+DL FRVSGKI+
Sbjct: 15  ALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVI----TGEVRARVQTDLSFRVSGKII 70

Query: 73  QRLVDTGQTVKRGQPLMRMDP----VDLNLQARAQQEAVTAARARAKQTGDDEARYRGLV 128
           +RLVD G  VK GQ L R+DP     D+++ A A  ++  A + +A+ T D   R + L 
Sbjct: 71  ERLVDVGARVKTGQLLARIDPEEQKADIDV-ALANLQSAEAQQTQAQLTFD---RQQNLF 126

Query: 129 ADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQ 188
                S S+ D+ +      +  + +AQAQ D AR+A  Y  L ADADGV+     E GQ
Sbjct: 127 KTQVTSRSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVITARNVEVGQ 186

Query: 189 VVSAGQAVVRLARAGQREAV--VYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSDAA 246
           V  A Q V  LA  G R+AV  VY    L     +    +L   PAQ V A +R +S   
Sbjct: 187 VAQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAAPVREISPTI 246

Query: 247 DPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIA 306
           DP   T   +  L G + + PLGA ++        D  A ++P  A+        VW++ 
Sbjct: 247 DPDNGTIRVKVGLNGDM-TMPLGAPVSGHFRFRQID--AIELPWSAMASQDGAPAVWLVD 303

Query: 307 GQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361
            + ++V+ R V+V      + VV   L+ GD +V +G   LR G +V  +   AQ
Sbjct: 304 PRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKVAYEKGQAQ 358