Pairwise Alignments

Query, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

Subject, 361 a.a., efflux protein from Agrobacterium fabrum C58

 Score =  143 bits (360), Expect = 8e-39
 Identities = 109/356 (30%), Positives = 174/356 (48%), Gaps = 11/356 (3%)

Query: 12  LLP-LALVACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGK 70
           L+P +AL +C +        + P  V +V V++  A A   +G V +R ++DLGFRV G+
Sbjct: 11  LIPAIALSSCQEKQEAA--AEAPRPVLSVVVEEKLADALRLTGTVESRIKTDLGFRVLGR 68

Query: 71  ILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVAD 130
           I+ R VD    VK+G  +  +DP+ L L  ++ Q  ++ A A+       E R R L   
Sbjct: 69  IIARNVDVADLVKKGDVVASIDPLALELSVKSAQSDLSNAEAQLANAVTTEQRQRVLAEA 128

Query: 131 GAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVV 190
            + + ++ ++ + A   A A ++ A+A  D A     YA L A+ DGVV  T  E GQVV
Sbjct: 129 RSGTEAALEEAEQAMRTANAAVAKARANLDKAEEQLGYAQLRAEFDGVVTATSGEIGQVV 188

Query: 191 SAGQAVVRLARAGQREAVVYLPE--TLRPAPGSTALATLFGKPAQAVPAKLRLLSDAADP 248
           SAGQ VV +AR   R+ VV +P+    R   GST    L   P   +   +R ++  A+ 
Sbjct: 189 SAGQTVVTIARPEVRDVVVDVPQFAAQRLEIGSTFEIALQLDPKIHMTGVVREIAPEAET 248

Query: 249 ITRTFEARYVLTGPLASAPLGATIT-LEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAG 307
            TRT   +  L     +  LG+ +T L +  ++       +P  AL    +G GVW++  
Sbjct: 249 ATRTRRTKISLQDAPQAFRLGSVVTALALAASEPQI---TLPASALLKTDSGWGVWIVNA 305

Query: 308 QPAKVSWRAVEVLSVSDEKAVVK--SDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361
             A V++R V +     E   V+    +  G+R+ + G H L+DG  +    +  Q
Sbjct: 306 DTATVTYRPVTIDGEPAEGGSVRITGGIKPGERVASAGVHKLKDGQAIRIDQEVRQ 361