Pairwise Alignments

Query, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  331 bits (849), Expect = 2e-95
 Identities = 178/405 (43%), Positives = 249/405 (61%), Gaps = 20/405 (4%)

Query: 30  ADFIGDSHARLELRNHYINRDFRQ----SNAPQAKAEEWGQGFTAKLESGFTEGPVGFGV 85
           A F+ D+ A++E RN Y NRDFR     S+   +K EEW QGF   ++SG+T+GPVG GV
Sbjct: 32  AGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGYTQGPVGVGV 91

Query: 86  DALGQLGIKLDSSRDRRNTGLLPFGPNSHEP---VDDYSELGLTGKVRVSKSTLRLGTLQ 142
           DALG  G KLDSS    N+GLLP   + H+P    D Y+++GL  KV+VS + L+ G++ 
Sbjct: 92  DALGMFGFKLDSSPADSNSGLLP--SSGHDPRRSADQYAKMGLAAKVKVSNTVLKYGSMM 149

Query: 143 PILPVVVYNDTRLLASSFQGGLLTSQDLDGLTFNAGRLTKANLRDSSGRDDIGYGAAS-- 200
           P +P++ YND RLL + F G +LTS++L  L F   RL K   RDS+ R DI     +  
Sbjct: 150 PDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDIRVHCKNKR 209

Query: 201 ------SDHLDFGGGSYAITPQTTVSYYYAKLQDIYRQQFVGLIDTRPLAEGVSLRSDLR 254
                 +DH D  G  Y    + +  Y  AKL++IYRQ F+GL+ ++PL  G SL +D+R
Sbjct: 210 YACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPLPVG-SLSADMR 268

Query: 255 YFDSRNDGAERAGNIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPFVNGGDPFTVNLV 314
              S + G  RAG ID+R F+ M    +  HK +A WQ+M G+SA P+++G +P+ VN  
Sbjct: 269 LIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYLDGSNPYLVNYA 328

Query: 315 TYNTFTRAGLDSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAET-ATVTNGRERERDTDIT 373
             N F  A   SWQVRYDYDF A+G+PGL+F TRY +G + +   +   G+E ERDT+  
Sbjct: 329 QVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGSSVEGKEWERDTEFK 388

Query: 374 YVIQSGPFKDVSLRWRNVTFRSG-NGLTNAVDENRLIIGYTLALW 417
           Y +QSG FKDVS+R RN T+RS        +DE R+I+ Y  +++
Sbjct: 389 YQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSIF 433