Pairwise Alignments

Query, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  212 bits (540), Expect = 2e-59
 Identities = 134/406 (33%), Positives = 208/406 (51%), Gaps = 34/406 (8%)

Query: 43  RNHYINRDFRQSNAP---------QAKAEEWGQGFTAKLESGFTEGPVGFGVDALGQLGI 93
           RN Y NRD R S AP            +E WG     + ESGFT+G VG G+DA   LG+
Sbjct: 43  RNFYFNRDNRDSVAPTHNPSKQADNGYSEAWGHAVITRFESGFTQGTVGVGLDAFAMLGL 102

Query: 94  KLDSSRDRR----NTGLLPFGPNSHEPVDDYSELGLTGKVRVSKSTLRLGTLQPILPVVV 149
           KLD+   R     +  +LP   +  +  D+Y+++G   K+R+  + L++G + P  PVV 
Sbjct: 103 KLDTGGGRNGGRSSFDVLPVDRDG-QARDEYTKVGGAAKLRLFDTVLKVGDVFPANPVVA 161

Query: 150 YNDTRLLASSFQGGLLTSQDLDGLTFNAGRLTKANLRDSSGRDD----IGYGAASSDHLD 205
             D+RLL  SF+G  L +  +  LT  AGRL   +   SS   +       G   S  + 
Sbjct: 162 AGDSRLLPESFRGVTLENSSIKDLTLQAGRLHAMSQPMSSDLRENFVTFYGGPVDSPWIA 221

Query: 206 FGGGSYAITPQTTVSYYYAKLQDIYRQQFVGLIDTRPLAEGVSLRSDLRYFDSRNDGAER 265
           +GGG Y +    +VS + ++L+D + Q + G   + PL+E ++L     Y+ + ++G +R
Sbjct: 222 YGGGDYRLNEHVSVSLFSSRLKDAWNQYYAGTSLSWPLSEALALIGGFNYYKAVDEGQQR 281

Query: 266 AGNIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPFVNGGDP-FTVNLVTYNTFTRAGL 324
            G  DN  ++A   +   AH    T Q+ +GD  F ++   D  F  N + Y+ F     
Sbjct: 282 LGAFDNDIWSAKLGVRFGAHTLALTHQRNNGDDDFDYLRQSDSIFLDNSIQYSDFNAPKE 341

Query: 325 DSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAETAT--------------VTNGRERERDT 370
            SW +RYD +  A G+PGLSFMTRY  G  A+ +               +T+ +  ERD 
Sbjct: 342 RSWMLRYDLNMAAYGVPGLSFMTRYGKGNDADYSNANATYMRRDVAGNPLTDQKRWERDI 401

Query: 371 DITYVIQSGPFKDVSLRWRNVTFRSGNGLTNAVDENRLIIGYTLAL 416
           ++ YV+Q+G  KD+SLR R  T R+     + +DE R+I+ Y L++
Sbjct: 402 EVKYVVQTGAAKDLSLRVRQATTRA-TAFESDLDEVRMIVEYPLSI 446