Pairwise Alignments

Query, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  212 bits (540), Expect = 2e-59
 Identities = 146/445 (32%), Positives = 215/445 (48%), Gaps = 38/445 (8%)

Query: 8   MNRTHFLSAAWLATVALPMPALAD-----FIGDSHARLELRNHYINRDFRQSNAP----- 57
           M  T     A    + L  PA AD     FI  +   +  RN + ++D+R  +       
Sbjct: 1   MRSTVCYRTALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNN 60

Query: 58  ---QAKAEEWGQGFTAKLESGFTEGPVGFGVDALGQLGIKLDSSRDRRNTGLLPFGPNSH 114
              Q+   EWG G  A L+SGFT G VGFGVD  G +G+KLD        G+   G  S 
Sbjct: 61  GERQSLHREWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSR 120

Query: 115 -------EPVDDYSELGLTGKVRVSKSTLRLGTLQPILPVVVYNDTRLLASSFQGGLLTS 167
                  EP D Y ++G   KVR   + LR G + P  PV+  +D RLL  + +G +  +
Sbjct: 121 SGSNFDGEPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNN 180

Query: 168 QDLDGLTFNAGRLTKANLRDSSG-RDDIGYGAAS----SDHLDFGGGSYAITPQTTVSYY 222
             LDGL+   G+L  ++ R++S  R D+G   A     ++ + + GG Y    Q T+  +
Sbjct: 181 NSLDGLSLQGGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLH 240

Query: 223 YAKLQDIYRQQFVGLIDTRPLAEGVSLRSDLRYFDSRNDGAERAGNIDNRNFNAMFTLGV 282
            ++L D++ Q F  +   +PL   +SL++ L Y+ +R+ G   AG IDN +++    L  
Sbjct: 241 SSRLDDVWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAA 300

Query: 283 RAHKFTATWQQMSGDSAFPFV-NGGDPFTVNLVTYNTFTRAGLDSWQVRYDYDFVAMGIP 341
            AH F  ++ ++ GD+ F +V N  D         + F      +W+ RYDYDF  +G+P
Sbjct: 301 GAHGFKLSYTRIDGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVP 360

Query: 342 GLSFMTRYT-----DGRHAETA-----TVTNGRERERDTDITYVIQSGPFKDVSLRWRNV 391
           GLS   RY      DG  A  A        +GR  ER+  + YV+QSGP KD+S      
Sbjct: 361 GLSLTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQA 420

Query: 392 TFRSGNG--LTNAVDENRLIIGYTL 414
           T R G      + VDE RLI+ Y L
Sbjct: 421 THRVGGDHVAESNVDELRLIVQYPL 445