Pairwise Alignments

Query, 273 a.a., non-homologous end joining protein from Pseudomonas putida KT2440

Subject, 323 a.a., Ku domain protein from Variovorax sp. SCN45

 Score =  273 bits (699), Expect = 3e-78
 Identities = 142/276 (51%), Positives = 194/276 (70%), Gaps = 7/276 (2%)

Query: 3   RAIWKGAISFGLVHIPVALNTAVRTERVDFDWLDKRSMEPVGYKRVNKVTGKEIDKDNIV 62
           R +WKGAISFGLVHIPVAL +A     +DFDWLDKR+M+PVGYKR+NK TGKEI ++ IV
Sbjct: 11  RVLWKGAISFGLVHIPVALYSATTDHGIDFDWLDKRTMDPVGYKRINKKTGKEIAREQIV 70

Query: 63  KGVEFEKGRYVVISEEEIRKARPETTQTIDIFSFVEAGDIPLQHFDTPYYLTPDRRGGKV 122
           KG+E+E G YVV+S++EI  A P+TTQTI+I +FV A  IP  + + PYY+ P  RG KV
Sbjct: 71  KGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPINRGAKV 130

Query: 123 YALLRETLEKTGKVALATVVLHTRQHLALLRPLDHALVMITLRWPEEVRGLETLELDA-S 181
           YALLRETL+++G+V +A VV+ T+QHLA+L P    LV+  LRW  ++R    L L +  
Sbjct: 131 YALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGPGLVLNLLRWGADIRPWTDLPLPSED 190

Query: 182 VTDSKVEKRELEMAKRLVEDMSGPWKPEDYHDAFRQTIMDLVEEKASKGKIEAVEKGDTG 241
              + + +REL+MAK LV+DMS  W P+++ D F+  I+ LV++K   G+ E V + +  
Sbjct: 191 AKKAGLSERELKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQTETVTQPEPE 250

Query: 242 AAE----KGADILDLTELLKRSLGGKKPVKKTRKAS 273
            ++    +GA I+DLTELL+RSL GK    KT KA+
Sbjct: 251 ESQSTEGRGAKIIDLTELLQRSLRGKG--GKTAKAA 284