Pairwise Alignments

Query, 321 a.a., putative Periplasmic aliphatic sulfonate-binding protein from Pseudomonas putida KT2440

Subject, 314 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 8e-39
 Identities = 99/308 (32%), Positives = 144/308 (46%), Gaps = 11/308 (3%)

Query: 1   MSIRTKLLTVAVALLLAGHASASERLTLRIGDQKGN-----MRAQLEAADALRDLPYDIR 55
           MSIR  L  VA  L  +   SA  + T+RIG QK +     ++ Q     AL+    D+ 
Sbjct: 1   MSIRRPLAAVAGLLAFSVAVSAEAQETVRIGYQKSSTLITLLKTQGTLEKALKADNIDVS 60

Query: 56  WAEFPAAAPLAEALNAGAIDAGI-IGDAPLLFVLASGAPVKAIAVDKSDPYGTALLVRPE 114
           W EFP+  PL EALN G +D    + D   +F  A+ A +   A +   P   A++VR +
Sbjct: 61  WHEFPSGLPLLEALNVGNVDISADVADTVPIFAQAAQAKLTYFAQEAPSPSAQAIVVRKD 120

Query: 115 APLRSAAELKGKRIATGRGSIGHHLALKALAQAGLTEKDVEFRFLGPVDAKIALANGSVD 174
           +P++  A+LKGK+IA  + +  H+L + ALAQ GL   D+   +L P D + A  N  VD
Sbjct: 121 SPIQQLADLKGKKIAVTKAAGTHYLLIAALAQTGLEFSDITPAYLSPADGRAAFENNKVD 180

Query: 175 AWSTWEPYTALAELSGQGRVLVNGRGL-STGNSFLAATDKALEEPGRRAALQDYLNRLAA 233
           AW TWEP+    +     R L +G GL S    +L  T  A   P     L+    +L  
Sbjct: 181 AWVTWEPFLTSVQRQLPTRTLADGAGLASYKRYYLTGTPYAKAHPD---VLKVVYAQLEK 237

Query: 234 AQVWANQHLDTYSKTLAAIIG-FPVEAARLQFERRQLRWQVIDTQTVTEQQDTADFYHTH 292
              W   H    +K L  + G   V         R  + Q +    + EQQ  AD +   
Sbjct: 238 TGQWVKTHPQDAAKVLGPLWGNLDVATVEAANAHRSYQVQPVTIDQLGEQQKIADAFFKA 297

Query: 293 GLMTERLD 300
           GL+ + +D
Sbjct: 298 GLLPKAVD 305