Pairwise Alignments

Query, 321 a.a., putative Periplasmic aliphatic sulfonate-binding protein from Pseudomonas putida KT2440

Subject, 342 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

 Score =  146 bits (368), Expect = 8e-40
 Identities = 103/317 (32%), Positives = 149/317 (47%), Gaps = 12/317 (3%)

Query: 4   RTKLLTVAVALLLAGHASASER---------LTLRIGDQKGNMRAQLEAADALRDLPYDI 54
           R +LL  A AL  A  A  +           +TLR+G  KG  R  L A+    + PY I
Sbjct: 18  RRRLLQAAAALGAAASAGWTRAAAPATDLSGVTLRVGTYKGLWRPLLTASGQA-NTPYKI 76

Query: 55  RWAEFPAAAPLAEALNAGAIDAGIIGDAPLLFVLASGAPVKAIAVDKSDPYGTALLVRPE 114
            W E        EA+N  A+D G   + P +F     + V+ +AV   D    A L R +
Sbjct: 77  DWRELNNGVLHIEAINGDALDLGSGSEIPPVFAARQKSSVRLVAVTHEDLNNQATLARKD 136

Query: 115 APLRSAAELKGKRIATGRGSIGHHLALKALAQAGLTEKDVEFRFLGPVDAKIALANGSVD 174
           AP+R+ A+ KGKR+   R +  H+   K LA+AGL+  D++   L P D   A A G +D
Sbjct: 137 APIRTIADFKGKRVGYVRATTSHYYLAKQLAEAGLSFSDIQAVSLTPSDGLSAFARGDLD 196

Query: 175 AWSTWEPYTALAELSGQGRVLVNGRGLSTGNSFLAATDKALEEPGRRAALQDYLNRLAAA 234
           AW+ +     LA +    RV+  G G  +GN  + A  +AL++  RRAAL D L RL  A
Sbjct: 197 AWAIYGYNGQLARIQYGARVIKTGVGYLSGNFPIYANPRALDDAPRRAALADLLQRLQRA 256

Query: 235 QVWANQHLDTYSKTLAAIIGFPVEAARLQFERRQLRWQV--IDTQTVTEQQDTADFYHTH 292
             W+N +  TY++  +A    PV      F  R   + +  +    V   QD AD +   
Sbjct: 257 FAWSNGNFLTYARAQSAETRVPVGDIVELFNGRSSDYSLGPVSDAVVRSHQDVADTFLKI 316

Query: 293 GLMTERLDVAPTFATGF 309
           G++    DV P +   F
Sbjct: 317 GVLDGPADVRPLWDRSF 333