Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  182 bits (461), Expect = 1e-50
 Identities = 111/318 (34%), Positives = 170/318 (53%), Gaps = 14/318 (4%)

Query: 1   MRRYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTY 60
           M  YL+ R+   +  L       + ++ L+PGD + +ML       +G  P  LA  R  
Sbjct: 1   MFAYLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLG------EGADPAQLALMRHQ 54

Query: 61  YGLDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGV 120
            GLD+ L  QY   L  AL GDLG S + G  V  L+ ER   +  +   A+AL+ L  V
Sbjct: 55  MGLDQPLPVQYLVWLRHALTGDLGVSTTNGLAVLPLIWERFQVSAVIVLVAVALASLIAV 114

Query: 121 GLACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATG-------- 172
               + A+ + +P   A+    +L  SVP FW+GLLL+  F   LGW P  G        
Sbjct: 115 PAGLVAAWRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPVVGYVPMSENF 174

Query: 173 SQGLASLVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARHGLRN 232
           SQG+  ++LP  TL +    V  ++ +     + +  Y+T A AKG+  +QV  RH L N
Sbjct: 175 SQGVLYVILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAKGVPESQVLRRHVLPN 234

Query: 233 AALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASAAAFV 292
           A  P LT++GL +G+ +SG  ++ET+F+  G+GRL  +++  +D PV+   +  +A  +V
Sbjct: 235 AFNPTLTMIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDYPVLQGCLLFTACIYV 294

Query: 293 VVNLLVDLFYPYLDPRIT 310
           V+NL+VDL YP  DPR++
Sbjct: 295 VINLVVDLCYPLFDPRVS 312