Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  182 bits (462), Expect = 9e-51
 Identities = 110/321 (34%), Positives = 174/321 (54%), Gaps = 18/321 (5%)

Query: 3   RYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTYYG 62
           R L+    QA+  + G   + + ++ L+PGD   ++ + SG      + E +A+ RT++G
Sbjct: 8   RTLVRTAWQAVPTVIGVILLNFILMQLIPGDAADVVAAESG----SATAESMAQLRTHFG 63

Query: 63  LDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGVGL 122
           LD  + +Q F  L    H  LG S     PV +L+  RL  TL L   A+A +L  G+  
Sbjct: 64  LDLPVIQQLFAYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAA 123

Query: 123 ACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATGSQGLAS---- 178
             + A    R     L+ L  L +S P FW+GL+ I +F+  LGW P  GS+ + +    
Sbjct: 124 GTVMATRVGRWQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTG 183

Query: 179 ----------LVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARH 228
                     LVLPA+ +A    A+++++ +     V ++ ++ TA AKGL    V  RH
Sbjct: 184 WTHVVDVARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRH 243

Query: 229 GLRNAALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASA 288
            LRNA +P+ T+ G+  G  + GAV+VET+FS  G+GRLA ++V  +D  V+L ++  S+
Sbjct: 244 ILRNALIPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSS 303

Query: 289 AAFVVVNLLVDLFYPYLDPRI 309
              +V N+LVDL + +LDPRI
Sbjct: 304 LLVIVANMLVDLLHAWLDPRI 324