Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  205 bits (522), Expect = 1e-57
 Identities = 121/322 (37%), Positives = 183/322 (56%), Gaps = 19/322 (5%)

Query: 3   RYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTYYG 62
           R+   R+ QAL ++     + + +++  PGD +  +  ASG    G+SPE +A+ RT YG
Sbjct: 8   RHAASRLLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASG----GMSPELMAQLRTQYG 63

Query: 63  LDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGVGL 122
           LDK L  Q    L +   GDLG S     PVT ++ ERLP TL L  +++ L+  AG  L
Sbjct: 64  LDKSLPVQLAVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTAL 123

Query: 123 ACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATGSQGLAS---- 178
             L++      L   +  L  +GF+ PVFW+G++L+ + A      P  G + + S    
Sbjct: 124 GVLSSRKPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGMRSIDSTGAG 183

Query: 179 -----------LVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQAR 227
                      LVLP +TL++   A Y+++ +     V    +I TA AKGL+   V  +
Sbjct: 184 GFADMLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLYK 243

Query: 228 HGLRNAALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGAS 287
           H LRNA LP++T++GLQ GN ++GA+LVET+F+  G+GRLA E+VLR+D P +L ++  S
Sbjct: 244 HALRNALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLFS 303

Query: 288 AAAFVVVNLLVDLFYPYLDPRI 309
           +   VV+N L DL Y ++DPRI
Sbjct: 304 SIVVVVMNQLTDLCYRFIDPRI 325