Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  201 bits (510), Expect = 3e-56
 Identities = 116/315 (36%), Positives = 176/315 (55%), Gaps = 14/315 (4%)

Query: 3   RYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTYYG 62
           RY+  R    L+VL     + + +     GD ++++L       D  +  D+A+ +  YG
Sbjct: 7   RYIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLG------DQATAADIARVQKEYG 60

Query: 63  LDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGVGL 122
           LDK L  Q+   L   L G+LG S+ L RPVT  L ER   T  LA  A+A++ L GV  
Sbjct: 61  LDKPLPVQFGYWLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPC 120

Query: 123 ACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATG--------SQ 174
             ++A  + R +      +  LG S+P FW+G++LIQ+FA + GWFP +G        ++
Sbjct: 121 GIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAE 180

Query: 175 GLASLVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARHGLRNAA 234
            L SLVLPA  L + ++A+  +  +     V  E Y+ TA +KGLS + V  +H LRNA 
Sbjct: 181 RLHSLVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNAL 240

Query: 235 LPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASAAAFVVV 294
           +P++T++GL V   + GAV+ ET+F   GVG L   AVLR+D PV+   +   AA +V++
Sbjct: 241 VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLI 300

Query: 295 NLLVDLFYPYLDPRI 309
           N  +DL Y  +DPR+
Sbjct: 301 NFSIDLLYAVVDPRV 315