Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 313 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  192 bits (487), Expect = 1e-53
 Identities = 119/319 (37%), Positives = 174/319 (54%), Gaps = 14/319 (4%)

Query: 1   MRRYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTY 60
           M  +L  R+   L VL       + I+ L PGD  A++   S         EDL + R  
Sbjct: 1   MLTFLGKRLLATLPVLLVVAVAIFMIVRLTPGDPAAVIGGNSATN------EDLDRIRVQ 54

Query: 61  YGLDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGV 120
            GL + L+EQ+       LHGDLG S  L +PVT L+ +R+  TL+LAG  + L++   +
Sbjct: 55  LGLTRPLWEQFAIWCNGVLHGDLGFSFFLNKPVTELIGQRMEPTLSLAGGTLLLAVAIAL 114

Query: 121 GLACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATGSQGLAS-- 178
            L  L A+     L  A+      GFSVPVF +G +LI + A  L WFP  G + +A   
Sbjct: 115 PLGTLAAWRMGGWLDKAVMAFSVAGFSVPVFVVGYVLIYLLAMKLQWFPVQGYRRIADGV 174

Query: 179 ------LVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARHGLRN 232
                 LVLP +TLAI   A+ ++V +        E +I TA AKG++  +V   H LRN
Sbjct: 175 GPWLHQLVLPCLTLAITYVALLSRVTRAAVSEALTEDFIRTARAKGITELEVLKHHALRN 234

Query: 233 AALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASAAAFV 292
           AA+P++T++G+     + G V+ ET+F+  G+G+L  +AVL +D PV+  +V   A  +V
Sbjct: 235 AAVPVVTVIGVSAALLLGGVVVTETVFAIPGLGQLTVDAVLNRDFPVLQGVVLFFAVVYV 294

Query: 293 VVNLLVDLFYPYLDPRITH 311
            VNLLVDL Y ++DPRI +
Sbjct: 295 AVNLLVDLSYLFIDPRIRY 313