Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  185 bits (469), Expect = 1e-51
 Identities = 114/321 (35%), Positives = 173/321 (53%), Gaps = 18/321 (5%)

Query: 3   RYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTYYG 62
           R L+  + QA+  ++   T+ +F+L L PGD    M + SG      + E +A  R  +G
Sbjct: 14  RSLLRNLIQAVPTMFVIVTLGFFVLQLAPGDAADYMAAESG----AATQETVADIRRAFG 69

Query: 63  LDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGVGL 122
           LD  L +Q  +      H  LG S   G PV  L+ ERLP TL L   AI ++LL G+  
Sbjct: 70  LDLPLLDQLANYYTSLAHFSLGISPRYGVPVADLIMERLPGTLTLMVLAIVIALLVGIAA 129

Query: 123 ACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATGSQGLAS---- 178
             + A    R     L+    L +SVP FW+GL+ I VF+  LGW PA G + + +    
Sbjct: 130 GTIMALNATRAADRILSVASLLFYSVPTFWIGLIFIIVFSVKLGWLPAGGMKTIGASSGG 189

Query: 179 ----------LVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARH 228
                      +LPA +LA+   A+YA++ +     V  + ++ TA AKGL+  QV  RH
Sbjct: 190 FGWLIDRVSYALLPATSLALYYMAIYARLTRSSILEVIGQDHVRTAKAKGLAPRQVVLRH 249

Query: 229 GLRNAALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASA 288
            LRNA +P+ T+ G+ V   + GA+++ET+FS  G+GRLA +AV+ ++  ++L I+  S+
Sbjct: 250 VLRNALIPITTVAGIHVAGILGGAIVIETVFSWPGMGRLAFDAVMAREYTLLLGIMLVSS 309

Query: 289 AAFVVVNLLVDLFYPYLDPRI 309
              + VN +VD+    LDPRI
Sbjct: 310 VLVICVNAIVDIIQAALDPRI 330