Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  171 bits (432), Expect = 3e-47
 Identities = 110/322 (34%), Positives = 173/322 (53%), Gaps = 23/322 (7%)

Query: 4   YLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTYYGL 63
           ++I R+G A+LV+     I  F+++ L GD + +M+       +  S ED A  R   GL
Sbjct: 4   FIIKRLGNAVLVMLSVALIA-FLIFRLAGDPVELMVG------EQTSQEDRAALRERLGL 56

Query: 64  DKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGVGLA 123
           +  L  QY   +  A  G+ G S   G+ V  L+AER P TL L   A  +SL+ G+ L 
Sbjct: 57  NDSLPTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLG 116

Query: 124 CLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATG----------- 172
            LTA  + +     L  L  +G S+P F +G+LLI VF+ +LGW PA G           
Sbjct: 117 VLTAIRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWS 176

Query: 173 -----SQGLASLVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQAR 227
                S G A+L+LPAI L++    +  ++++     V +  ++  A A+G+ R ++  R
Sbjct: 177 TGLLTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFR 236

Query: 228 HGLRNAALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGAS 287
           H LRN  +P++TL  + VG+ ++ A++ ET+F   G+G L  +AV   DIPV+ A +   
Sbjct: 237 HALRNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCII 296

Query: 288 AAAFVVVNLLVDLFYPYLDPRI 309
           +  FVV+N  VD+ Y  +DPR+
Sbjct: 297 SFIFVVLNTFVDIAYAVIDPRL 318