Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  205 bits (521), Expect = 1e-57
 Identities = 127/322 (39%), Positives = 181/322 (56%), Gaps = 14/322 (4%)

Query: 1   MRRYLIGRVGQALLVLWGAYTITYFILYLLPGDTLAIMLSASGMEADGLSPEDLAKARTY 60
           M   LI R+   ++ L+    I Y ++ LLPGD  AIML  S       SP+ LA  +  
Sbjct: 1   MLAVLIRRLVSLIITLFAVSLIIYVVMGLLPGDPAAIMLGTSA------SPDTLAALQKQ 54

Query: 61  YGLDKGLFEQYFDLLWRALHGDLGQSLSLGRPVTALLAERLPQTLALAGAAIALSLLAGV 120
            GLD+ L  +Y   L     GDLGQS + G PV  L+ ERL  TL LA  AI LS+   +
Sbjct: 55  MGLDQPLPLRYLHWLAGVFRGDLGQSYTYGVPVAGLIIERLAVTLPLALLAIFLSVTIAI 114

Query: 121 GLACLTAYLQWRPLKTALARLPSLGFSVPVFWMGLLLIQVFAFALGWFPATG-------- 172
            L    A  +   L  A      +G +VP FW+GLLLI VF+  LGW P+ G        
Sbjct: 115 PLGVAAAQNRNGALDFAAGLFSHVGIAVPGFWVGLLLIIVFSTTLGWMPSGGFPGWSPSF 174

Query: 173 SQGLASLVLPAITLAIPSAAVYAQVLQRGFQGVWQEPYITTAFAKGLSRAQVQARHGLRN 232
           S GL +LVLPAI LA+  A V  +V +     V  E ++ TA AKGLS      RH + N
Sbjct: 175 SAGLVALVLPAIALALSQAGVLTRVCRSAVLEVMNEDFVRTARAKGLSERVALWRHAVPN 234

Query: 233 AALPLLTLVGLQVGNTVSGAVLVETIFSRNGVGRLAQEAVLRQDIPVVLAIVGASAAAFV 292
           A +P++T++GLQ    ++GAVLVE +F+  G+GRLA +A+ ++DI V+ ++V   +A  +
Sbjct: 235 AMIPVVTMIGLQFTFLIAGAVLVENVFNLPGLGRLAYQALTQRDIVVMQSVVLFFSALVI 294

Query: 293 VVNLLVDLFYPYLDPRITHTAK 314
           ++N +VD+ Y ++DPR+   A+
Sbjct: 295 IMNFVVDIAYLFIDPRLRAGAR 316