Pairwise Alignments

Query, 302 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 284 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

 Score =  211 bits (536), Expect = 2e-59
 Identities = 113/273 (41%), Positives = 161/273 (58%), Gaps = 12/273 (4%)

Query: 19  PAATWRRRTRWQRAYQMLAPLLRRPGFSLALLIVLFALLCALAPHWLSSFDPYATAPADK 78
           P A  RRR  W  A  ++            LL+VL AL  AL     S FDP       +
Sbjct: 8   PVAAKRRRV-WAPANALIGG---------GLLVVLIAL--ALMGLVWSPFDPLKIDLMSR 55

Query: 79  LSPPSLAHWFGTDELGRDLYTRVVYGARLSVLAALLAVAIALLGGLGLGVLAGFAGGHVD 138
              PS AHW GTDE GRD+++R++ GAR S+  +LL V++A+L G  +G+LAG+  G  D
Sbjct: 56  FQAPSAAHWLGTDEFGRDVFSRLLIGARTSLWVSLLTVSVAVLAGTLIGMLAGYLRGWTD 115

Query: 139 AALMRLIDVLLALPGLLLALAIVTAIGFGTVPVAVAVGVGILPGFARTTRAEVLRIKTLP 198
             LM   D LLA PG+L+AL I+  IG     + +A+G+   P   R  R  VL ++ L 
Sbjct: 116 RVLMMFNDALLAFPGILMALGIMAIIGASKYGIVLALGIAYTPSVVRVVRGTVLSLRELE 175

Query: 199 FVEAARLCGASWARTLLRHVLPNAWSPVAVLATLDFGAAILATAGLSFLGFGAAPPAAEW 258
           ++EA+R+ G S   T+LRH+ PN  +P+ VLAT  FG A+L+ + LSFLG G  PPAA W
Sbjct: 176 YIEASRVIGNSELYTMLRHIAPNCLAPLCVLATSMFGWALLSESALSFLGLGVPPPAATW 235

Query: 259 GTLIANGRHFLITAPWLSLLPGLFVVAVVFSLN 291
           G ++A+ R ++ +APWL + PGLF+   + ++N
Sbjct: 236 GNMLASSRPYIASAPWLGVFPGLFICLTLLAIN 268