Pairwise Alignments

Query, 302 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 271 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  181 bits (460), Expect = 1e-50
 Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 1/239 (0%)

Query: 55  ALLCALAPHWLSSFDPYATAPADKLSPPSLAHWFGTDELGRDLYTRVVYGARLSVLAALL 114
           AL   +   W + FDP     A +L+ P   HW GTDE GRD+ +R++  A  S   ++L
Sbjct: 19  ALAAGIGLFW-TPFDPVTLGYAKRLAAPDAVHWLGTDEFGRDVLSRLMTAAATSARISVL 77

Query: 115 AVAIALLGGLGLGVLAGFAGGHVDAALMRLIDVLLALPGLLLALAIVTAIGFGTVPVAVA 174
            VA A+L G  +GVL+G+  G  D  LM   D LLA PG+LLAL  +   G     + VA
Sbjct: 78  TVATAVLLGTLVGVLSGYLRGWTDRVLMAFNDALLAFPGILLALGFLAVAGANEYGIVVA 137

Query: 175 VGVGILPGFARTTRAEVLRIKTLPFVEAARLCGASWARTLLRHVLPNAWSPVAVLATLDF 234
           +G+   P  AR  R  V+ ++ + ++ A+RL G S    + RHVLPN  +P+ VLAT  F
Sbjct: 138 LGIAYAPSVARIVRGTVMSLREMDYIAASRLMGNSEFFIVWRHVLPNCVAPLVVLATSMF 197

Query: 235 GAAILATAGLSFLGFGAAPPAAEWGTLIANGRHFLITAPWLSLLPGLFVVAVVFSLNHL 293
           G A+LA + LSFLG G  PPA  WG ++A  R F+  A WL++ PG  +   +  +N L
Sbjct: 198 GWALLAESALSFLGLGVPPPAPTWGNMLAGSRPFIAKAVWLAIFPGACISLTLLGINLL 256