Pairwise Alignments

Query, 342 a.a., ABC transporter, periplasmic binding component-related protein from Pseudomonas putida KT2440

Subject, 333 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

 Score = 80.1 bits (196), Expect = 7e-20
 Identities = 89/331 (26%), Positives = 138/331 (41%), Gaps = 38/331 (11%)

Query: 12  LRSLLAAALLPTTLTIAPLAIAGDK----VVLLTSWYAQAEQGGFYQALADGLYEKEGLD 67
           L SLLAAA L  T  IAP    GDK    V L+ +WY  +E   F+     G Y  EG+D
Sbjct: 5   LPSLLAAAAL-ATFAIAPAQAQGDKPKDKVTLMLNWYLYSEHAPFFLGKEKGFYADEGID 63

Query: 68  VSIRMGGPQVNGMQLLVSKQADFIVNYDLQILKSVEQGLPVVAVAAPFQGDPQGLMTHAD 127
           + I+ G       Q + +K A F       ++K+  +G P+ +    FQ  P  +M  ++
Sbjct: 64  LDIQEGRGSAVTAQAVAAKSATFGYIDVTTMIKAAAKGAPLKSTGVLFQVSPMSVMGFSE 123

Query: 128 ---VSGLDALGGKPVLVSTSGQQTWWPWLKGKYQLADNQARPYTFNLQPFLADPQTTQQA 184
               +  D +G    +         WP       L  N  +P    +     D QT   A
Sbjct: 124 KNIKTPKDIIGKTVAVTPGDSMSQMWPLF-----LKVNDIKPDQVKI--VSGDGQTKLNA 176

Query: 185 YASSE--------LFQAIK------AGVTPNFFLFADAGYPPYGSTVVTRQDIIAEHPER 230
             + +        + QAIK        VTP    FAD+G     S ++T ++++ E+P+ 
Sbjct: 177 VTNGQADLLLGYVMDQAIKLQDATGKPVTP--IRFADSGVNQISSGIITNKNLLTENPDL 234

Query: 231 VAGFVRASMEGWKRYLDDPSAG-NALIKRD-NPNMTDELLAWGVSTLKQYRLVTGGEAAT 288
           V  F+RAS +  +     P A  +A++K +    + D L+   V   +   L    E A 
Sbjct: 235 VKRFMRASTKAAEAAEKSPEAAVDAMLKANAKAGVRDTLI---VGMKQSVALYHTKETAN 291

Query: 289 QGIGTMTDSRWQATRDFMVEAGLLGPDAPWR 319
           Q    +T      + D +V+ G  G DA  R
Sbjct: 292 QRPFRVTMKNVSDSLDLLVQYG--GMDASTR 320