Pairwise Alignments

Query, 267 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 252 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

 Score =  129 bits (323), Expect = 8e-35
 Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 6/247 (2%)

Query: 19  SPLLVGALLLGVWQLACIAWKVPVYLVPSPADIGRTLVADGPMLLGALWMTLKITFLSFA 78
           SP L    L  VW+L   A+      +P+ + I +   +  P L+     TL  T L FA
Sbjct: 11  SPALAFIGLALVWELYVHAFAPSPRYLPALSAIAQDAWSVWPQLVRGFGRTLLETVLGFA 70

Query: 79  LAVVIGTLAAFVFVQSRVVEASLFPYAILLQVTPVVAIAPLIIIWCSDTTLALVICATLV 138
           L  V G     VF  SR +E S+FP  ++ Q  PVVA   LI+IW  ++ LA V+ A  +
Sbjct: 71  LGAVFGCFCGTVFTYSRWMERSVFPLFVVSQTVPVVAFGALIVIWFGNSLLAKVMTAFFL 130

Query: 139 AIFPIIANTVLGLRSVNPGLLNLFHLNRASRWQVLLRLRIPSALPCFFAGLRIASGLALI 198
             FP+  NT+ GL+S +P  + L     A+R  +  +L +PSALP    GLR+A GL+LI
Sbjct: 131 TFFPVTVNTLRGLKSCDPQRIALMKSFGANRLVMFFKLAVPSALPQIMVGLRVAIGLSLI 190

Query: 199 GAVVAEFVAGTGGTGAGLAYQILQAGFQLNIPRLFAALVLIALTGVALFSLMALLARLSL 258
           G+VV E+     G   GL   +++A     + RL+  +    L G  L+ L+  + R  +
Sbjct: 191 GSVVGEWF----GETVGLGVMLMEAMNADLVVRLWVVMFACGLMGALLYGLLTFVERRLV 246

Query: 259 RHWHESE 265
             W  SE
Sbjct: 247 --WWRSE 251