Pairwise Alignments

Query, 826 a.a., putative Transporter from Pseudomonas putida KT2440

Subject, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 53.9 bits (128), Expect = 5e-11
 Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 35/235 (14%)

Query: 584 KADTLARVVDSV---QAFAQANDSEQASFLMAAGSAGIEAATNQVVKQANRDM------- 633
           + D +AR+ D++   +A A  N      F +A      E      V++A  DM       
Sbjct: 254 RLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAVQKALADMRAQRPDI 313

Query: 634 -------------------LWWVYGAVIVLCLVTF---RSWRAVLCAVLPLVLTSILCEA 671
                              L  +Y   I+  +V +   R WRA   + + L ++ I    
Sbjct: 314 ELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATFVSAVALPMSVIPAFI 373

Query: 672 LMVALGIGVKVATLPVIALGVGIGVDYALYVMSIVLAQLRQGASLSQAYYRALLFTGKVV 731
            M  LG  V V +L  ++L VGI VD A+  +  ++  LR G +  QA   A    G  V
Sbjct: 374 GMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAV 433

Query: 732 MLTGITL-AIGVGTWIFSPI--KFQADMGVLLAFMFVWNMVGALILLPALAYFLL 783
           + T  TL A+ + T   S I  KF    G   A     ++V A +L P +A ++L
Sbjct: 434 IATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARVLTPMMAAYML 488



 Score = 44.3 bits (103), Expect = 4e-08
 Identities = 74/322 (22%), Positives = 133/322 (41%), Gaps = 50/322 (15%)

Query: 100  DYLHSLQQLNDAVYLLPGV---------DRAAMKSLWTPSTRW----TGVTEEGLEGGPV 146
            DY  SL +LN A   +P V         D   +  L  P TR       V    +EGGP 
Sbjct: 727  DYDQSLAKLNLAQRQVPIVVKLEDSARQDIDLLGRLSVPGTRGPVMLNQVASLSMEGGPA 786

Query: 147  VPDGYDGAAASLEALKRNVERSNEIGQLVAFDQRSSIVYVPLLEKTPDGQALDYTAFAHE 206
            V D YD +        RNV    E+  +   D ++++  +P ++K P G  +   A   +
Sbjct: 787  VIDRYDRS--------RNVNFEIELSGVGLGDAKAAVQKLPSIQKLPPGVRI---AEVGD 835

Query: 207  LETLRERFQAQGVEIHITG----FAKVVGDLMDGLRQILLFFAAAIAITAAVLYWYTRCV 262
             E + E F + G+ + +TG    +  +V    D L  + +  A  +A+  A +       
Sbjct: 836  AEVMTELFASFGLAM-LTGVLCIYIVLVLLFKDFLHPVTILCALPLALGGAFV------- 887

Query: 263  RSTALVVVCSLVAVIWQLGLLPLLGYALDPYSVLVPFLVFAIGMSHGAQKMNGIMQDIGR 322
                L++    +++   +GL+ L+G A     +LV + + A    HG  + + +     +
Sbjct: 888  ---GLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVA-RRDHGMSRWDALRDACHK 943

Query: 323  GMHRLVAARFTFRRLFLAGLTALLCDAVGFAVLMIIQIQVIQDLAVIASLGVAVLIFTNL 382
                ++          LA    +L  AVGF        +    +AVI  L  + ++  +L
Sbjct: 944  RARPIIMTT-------LAMGAGMLPIAVGFG-SADSSFRSPMAMAVIGGLITSTVL--SL 993

Query: 383  ILLPVLLSYVGVSARAARRSLR 404
            +++P + +YV       RR++R
Sbjct: 994  LVVPAVFTYVDDIEHWIRRTVR 1015