Pairwise Alignments

Query, 316 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 375 a.a., integrase from Sphingobium sp. HT1-2

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 89/333 (26%), Positives = 142/333 (42%), Gaps = 58/333 (17%)

Query: 5   ERYLRAATRD---NTRRSYQAAIEHFESHWGGFL-----------PATAESIARYLADHA 50
           E  + AA R    NTRR++++ +    + WG +             A   S  R LA   
Sbjct: 37  EALVAAAVRGWSANTRRAFRSDL----TLWGKWCRQNRIAADRADAALVASWIRALAGID 92

Query: 51  D----QHAVSTLRQRLAALSQWHVAQGFPDPTKAPLVRQVLRGIRTLHPTPPKQAAPLLL 106
           D    Q A++T+ + +  +   +   G PDPT  PLVR   +  R       +QA  +  
Sbjct: 93  DSSETQRAMATIERYIVNVGWAYRMAGLPDPTSMPLVRLEKKAARKALGVKQRQARAI-- 150

Query: 107 QHLQTAVTCFEEEARQAREHHDLAALRRAR---RDSALLLLGFWRGFRGDELARLRIEHI 163
              +  ++  +  A      H + A RR     RD A L + +  G R  EL  + ++H+
Sbjct: 151 -RFKGEISDLDSPAVGVCLAHLVRACRRDELGLRDEAFLRVAYDTGARRSELVAIDVDHV 209

Query: 164 QAQ--AGVGITLFLPRSKGDREALGVQHRTPALKALCPVT--AYLQWLEVAGIAHGPVFR 219
           +     G GI LF+P SK D+   G      A   L P T  A  +W + A +  GP+FR
Sbjct: 210 EGPDTEGAGI-LFIPSSKTDQVGEG------AYAYLAPKTMAAIRRWRDKADVRKGPLFR 262

Query: 220 KLDRWGN-----LGDNALNSNSLVGLLRRMLERAGVP--------------AALYTGHSL 260
           +++   +     +G N L+ NS+  + RR++  A                  A  + HS+
Sbjct: 263 RVETHFDGSVAAIGRNRLHPNSVTLIYRRLIRAAWERKLLGAMSEAELERWVAAVSSHSI 322

Query: 261 RRGFATWATANGWELKSLMSYVGWKDAKSALRY 293
           R G A    A G  L ++M    W+D K+ +RY
Sbjct: 323 RVGVAQDNFAAGEGLPAIMQAYRWRDPKTVMRY 355