Pairwise Alignments

Query, 316 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 346 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 78/262 (29%), Positives = 112/262 (42%), Gaps = 34/262 (12%)

Query: 53  HAVSTLRQRLA---ALSQWHVAQG-FPDPTKAPLVRQVLRGI-RTLHPTPPKQAAPLLLQ 107
           HA ST+R+RLA    L++W    G F  P     +R  +R + RT      K     +L 
Sbjct: 95  HAPSTVRRRLANWSTLTRWRGLHGAFASPALKSAIRLAVRAVPRTRARKSAKAVTGDVLA 154

Query: 108 HLQTAVTCFEEEARQAREHHDLAALRRARRDSALLLLGFWRGFRG-DELARLRIEHIQAQ 166
            L    TC  +  R  R             D A+L++ F  G R   E+A LR E +  +
Sbjct: 155 KL--LATCESDSLRDLR-------------DKAILMVAFASGGRRRSEIAGLRREQLTIE 199

Query: 167 AGV---------GITLFLPRSKGDREALGVQHRTPALKALCPVTAYLQWLEVAGIAHGPV 217
           A +          + + L R+K      G +  T  L    PV A   WL  A I  G V
Sbjct: 200 APIETEGGPPLPSLAIHLGRTK---TTSGEEDDTVFLTGR-PVEALNAWLAAAKIDKGSV 255

Query: 218 FRKLDRWGNLGDNALNSNSLVGLLRRMLERAGVPAALYTGHSLRRGFATWATANGWELKS 277
           FR + RWG +   AL+  S+  +L++  E AG+ A  ++ H LR G+ T A   G  L  
Sbjct: 256 FRGIGRWGTVSRRALDPQSVNAILKQRAEMAGLEAGQFSAHGLRSGYLTEAANRGIPLPE 315

Query: 278 LMSYVGWKDAKSALRYIDSAQR 299
            M     +  + A  Y +SA R
Sbjct: 316 AMEQSRHRSVQQASSYYNSATR 337