Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 359 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  408 bits (1049), Expect = e-118
 Identities = 193/358 (53%), Positives = 261/358 (72%), Gaps = 4/358 (1%)

Query: 6   ALIPAAFTLLFATTTQAAPTVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNETLEGK 65
           AL+P    +L A+  QAA TV +YNW+DYI   T  +FQ  +GI   YDV+DSNETL+GK
Sbjct: 5   ALLPL---MLVASIGQAAETVKIYNWSDYIAPDTTKNFQKETGIGFTYDVYDSNETLDGK 61

Query: 66  LLAGRTGYDVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAV 125
           L+ G++GYDVV PSNHF+ARQ Q GA   LD+S+LPNW++L+P LLK LE NDPGN +  
Sbjct: 62  LMTGKSGYDVVFPSNHFMARQIQGGALKKLDKSQLPNWKNLNPVLLKALENNDPGNAHGF 121

Query: 126 PYLWGTNGIGYNVDKVKAALGVDH-IDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVL 184
           PYLWG+ GIGYN+DKVKA LG +  +DSW ++F+PEN+ KL++CGVA +D+  EL PA L
Sbjct: 122 PYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPENMAKLQKCGVAILDNGPELLPAAL 181

Query: 185 NYLGMDPRSEKPGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDVFQAA 244
           NYLG+   S+KP DY KAE  L+++RPY+ YFHSSKY +DLANGD+C+A G+SGD+ QA 
Sbjct: 182 NYLGLPHHSKKPEDYKKAEDLLMKVRPYVAYFHSSKYTADLANGDICVAVGFSGDILQAE 241

Query: 245 NRAVEAKNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATV 304
           +RA EAKNGV + Y+IPKEG+ +WFD++A+P DA N     AF+NYLL P+V+A ++  V
Sbjct: 242 SRAKEAKNGVNIGYNIPKEGAAIWFDMVAMPADAPNEAAGYAFMNYLLRPQVMASITNYV 301

Query: 305 GYANANPDAKAYMDASLVNNPEIYPPQEVLDKLYISSTPSPKIMRVMTRSWSKIKSNR 362
            YAN N  A + +D ++  + +IYP  E++ KL+        I RV TR W+ I++ +
Sbjct: 302 HYANGNQAADSLVDPAIKADTKIYPSPEMMGKLFALEAMPLNIDRVRTRVWNTIRTGK 359