Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Escherichia coli ECRC100

 Score =  179 bits (454), Expect = 1e-49
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 18/311 (5%)

Query: 25  TVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNETLEGKLLAGRTG-YDVVVPSNHFL 83
           T+  YNWT+Y+    L  F   +GIKV+Y  ++SNET+  KL   + G YD+VVPS +++
Sbjct: 28  TLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYV 87

Query: 84  ARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAVPYLWGTNGIGYNVDKVKA 143
            +  + G    +D+SKL N+ +LDP +L +    DP N Y++PY+WG   IG N D    
Sbjct: 88  DKMRKEGMIQKIDKSKLTNFSNLDPDMLNK--PFDPNNDYSIPYIWGATAIGVNGD---- 141

Query: 144 ALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVLNYLGMDPRSEKPGDYAKAE 203
           A+    + SWA L++PE    L        D   E+F   L  LG    +  P +   A 
Sbjct: 142 AVDPKSVTSWADLWKPEYKGSL-----LLTDDAREVFQMALRKLGYSGNTTDPKEIEAAY 196

Query: 204 ARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDVFQAANRAVEAKNGVKVAYSIPKE 263
             L +L P +  F+S    +    G+V +   ++G  F      V  + G  +    PKE
Sbjct: 197 NELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAF------VARQAGTPIDVVWPKE 250

Query: 264 GSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATVGYANANPDAKAYMDASLVN 323
           G   W D LAIP +A N E AL  IN+LL P V  +V+ T+GY   N  A+  +   + N
Sbjct: 251 GGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVAN 310

Query: 324 NPEIYPPQEVL 334
           +  + P  E +
Sbjct: 311 DKTLSPDAETI 321