Pairwise Alignments

Query, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

 Score =  371 bits (952), Expect = e-107
 Identities = 185/360 (51%), Positives = 243/360 (67%), Gaps = 1/360 (0%)

Query: 2   RHLQALIPAAFTLLFATTTQAAP-TVSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNE 60
           R L+  +     L+ A +  A    V VYNW+DYI    L DF   +GIKVVYDV+D NE
Sbjct: 4   RSLRLTLALTTALVAAGSAMAQEKVVHVYNWSDYIDPVILEDFTKETGIKVVYDVYDGNE 63

Query: 61  TLEGKLLAGRTGYDVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPG 120
            LE KLLAG +GYDVV P++ FLARQ +AG +  LD+SKLPN ++  P + ++L + DPG
Sbjct: 64  VLETKLLAGSSGYDVVAPTSPFLARQIKAGVYQKLDKSKLPNLKNAWPDITERLAKYDPG 123

Query: 121 NQYAVPYLWGTNGIGYNVDKVKAALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSPDELF 180
           N+YAV Y+WGT GIGYNV KVKAALG   +DSW VLF+PEN +KLK CG+  +D+ DE F
Sbjct: 124 NEYAVNYMWGTTGIGYNVAKVKAALGDVPVDSWDVLFKPENAEKLKSCGINILDASDETF 183

Query: 181 PAVLNYLGMDPRSEKPGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDV 240
              +NYLG +P S++  D         ++RPY+  F+SS Y++DLANGD CI+ G+SGD+
Sbjct: 184 AIAMNYLGKNPDSKETADLEAGGEVYSKIRPYVKTFNSSPYINDLANGDTCISIGWSGDI 243

Query: 241 FQAANRAVEAKNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKV 300
            QA  RA EAKNGV+V Y IPKEG+ +W D  AIP DA N ++A AFINY++ P+V AK 
Sbjct: 244 LQAKTRAEEAKNGVEVNYVIPKEGTYIWMDSFAIPADAKNVDEAHAFINYMMKPEVAAKA 303

Query: 301 SATVGYANANPDAKAYMDASLVNNPEIYPPQEVLDKLYISSTPSPKIMRVMTRSWSKIKS 360
           S  V YAN N  ++A MD S+  NP +YP  E + KL+  S   PK  RV+ R W++IK+
Sbjct: 304 SDYVQYANGNLPSQALMDPSVAKNPGVYPDPETMKKLFTISPYGPKEQRVLNRVWTQIKT 363