Pairwise Alignments

Query, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

Subject, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  907 bits (2344), Expect = 0.0
 Identities = 492/1036 (47%), Positives = 667/1036 (64%), Gaps = 18/1036 (1%)

Query: 13   YAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLRLI 72
            YAEL   ++FSF RGASSA ELF  A+  G +AL + D  +LAGIVRA +A++   LRL+
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 73   VGSEVQLCDGPKLVLLVENLTGYQNLCALITRARRRAEKGAYQLFRDDLLLHHQGLLALW 132
            +G  + L DG  +++   +   Y  L  LIT  + R  K    L  DD++ +  G++ + 
Sbjct: 63   IGCRLDLADGMSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLLHWDDVVAYTDGMIGIL 122

Query: 133  VAADSGDTATGAWLRSV---FAERLWLAVHLHRGSDDAVRLQRLRALAADVGIRAVACGD 189
            V  D  D   G  LR +   F +R ++++ L R  +D +RL  +  LA    +R V   D
Sbjct: 123  VP-DLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQNDQLRLHEISNLATRFKVRTVVTND 181

Query: 190  VHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERHLRSQAQLAELYPL--DLLAETL 247
            V  H  GRR LQD +T IR    + E G     + +R+L+   ++  L+P     LA T+
Sbjct: 182  VLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPEEMERLFPRYRQALARTM 241

Query: 248  VIARRCQFDLSELNYQYPRELVPEGHTPASWLRELCEQGMPLRWPDGPSGKVRDVLAKEL 307
             I RRC F L EL YQYP E +  G    + L     Q +P R+P+G    V  V+  EL
Sbjct: 242  EIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDRYPEGLPPDVLKVVRHEL 301

Query: 308  GLIEELGYESYFLTVHDIVAFARSQRILCQGRGSAANSVVCFVLGITELDPMKHHLLFER 367
             LI  + Y  YFLTV  IV +ARSQ ILCQGRGSAANS VC++LGIT +DP  + LLFER
Sbjct: 302  DLIRTMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFER 361

Query: 368  FLSRERNEPPDIDVDFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALG 427
            F+S+ER+EPPDIDVDFEH+RREEVIQ+++R Y R +AAL A V  Y A GA+RDV +ALG
Sbjct: 362  FVSQERDEPPDIDVDFEHERREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALG 421

Query: 428  LPADQVDALAKCCGRWSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPG 487
            LP D + AL+     WS+ + D + + E         L   L LA +L+G PRHL QHPG
Sbjct: 422  LPEDVIKALSSGMWSWSEEVCD-RNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPG 480

Query: 488  GFVISQQPLDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQ 547
            GFV++   LD LVP+E A M +R +I+WDKDD++ +  +KVD+LALGML+ + + FD ++
Sbjct: 481  GFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIR 540

Query: 548  HHRGRHLTLATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAI 607
             H+ R L L+ I  ED  TYAMI +A+T+G FQIESRAQMAMLPRL+P+ FYDLV++VAI
Sbjct: 541  EHKDRDLDLSKIEQEDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAI 600

Query: 608  VRPGPIQGDMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTP 667
            VRPGPIQGDMVHPYLRRR  +E V YP+P+L+ V  +TLGVPLFQE  M +AMV A +T 
Sbjct: 601  VRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTG 660

Query: 668  GEADQLRRSMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHA 727
            GEADQLR+SMA +K  GG+   +++LV GM+RNGY   FAE+ F Q++GFGSYGFPESHA
Sbjct: 661  GEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHA 720

Query: 728  ASFALLCYASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDW 787
            ASFAL+ YASS++KCH P  F  AL+NS PMGFY+P Q++ +AR  G+EVRPV +  S W
Sbjct: 721  ASFALIAYASSYIKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRW 780

Query: 788  DCTLEPDAEGTL-AIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAGLDARARA 846
            DCTLE        A+R+G R V+GLA ADA RV  AR    + +V+D+  R+G+ + A  
Sbjct: 781  DCTLERIGNSDRHAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRSGVPSEALV 840

Query: 847  RLADGGA-LRALASDRHQARWQVAAVQPQ-LPLFA-----DVQALPEEP---VQLPVPTV 896
            +LA   A L +L  +R  A W + A++ + LPLFA     ++ A+ E+    V L   T 
Sbjct: 841  QLAKADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMTD 900

Query: 897  GEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQ 956
            G +++ DY   G TL  HP+A LR  L      + +E      G  +  AGLV+ RQ+P 
Sbjct: 901  GHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKPG 960

Query: 957  TASGVTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRLEQENGVRHLIARRLE 1016
            +A GV F+T+EDE G  N+VVW  L E++RRA++GS ++ ++GR+++E  V HL+A++L 
Sbjct: 961  SAKGVMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQREGEVVHLVAQQLF 1020

Query: 1017 DVSPLLQGLDVRSRDF 1032
            D+S  L GL  R  +F
Sbjct: 1021 DLSGDLTGLADRDEEF 1036