Pairwise Alignments

Query, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  402 bits (1034), Expect = e-116
 Identities = 336/1104 (30%), Positives = 521/1104 (47%), Gaps = 93/1104 (8%)

Query: 8    MNTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVH 67
            + TPG+  L   S +S   GA    ++  +A   G  A+AITD   L   +   + A+  
Sbjct: 15   LKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDE 74

Query: 68   QLRLIVGSEVQ----------------LCDGPKLVLLVENLTGYQNLCALITRARRRAEK 111
             L+ I+G ++                 L   P +VLL  N  GY+ L  L++RA    E 
Sbjct: 75   GLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEG 134

Query: 112  GAYQLFRDDLLLH---HQGLLALW--------VAADSGDTATGA----WLRSVFAERLWL 156
            G++ +      L    + GL+AL         +A   G  A        L+S+F +RL++
Sbjct: 135  GSHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYI 194

Query: 157  AVHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEA 216
             +    G D +   +RL  LA +  I  VA  +     +      D + A+  +  VS+ 
Sbjct: 195  ELQRQSGYDRSHE-RRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDD 253

Query: 217  GRFLFANGERHLRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELV----P 270
             RF     + +L+S+ ++  L+    + L  T+ IA RC + L +     PR       P
Sbjct: 254  SRFRLTP-DHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDP 312

Query: 271  EGHTPASW--LRELCEQGMPLRW------PDGPSGKVRDVLAKELGLIEELGYESYFLTV 322
            E    A    LR    +G+  R       P       R+ L  ELG+I  + +  YFL V
Sbjct: 313  EAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIV 372

Query: 323  HDIVAFARSQRI-LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDV 381
             D + +A+ Q I +  GRGS A S+V + L IT++DP++  LLFERFL+ ER   PD D+
Sbjct: 373  ADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDI 432

Query: 382  DFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCG 441
            DF  DRREEVI+YV R+YGR + A      +  A  A+RDV R L +P  QVD + K   
Sbjct: 433  DFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVP 492

Query: 442  R-------WSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQ 494
                     S  I ++ RL E   +   P + R+L +A ++ G  RH S H  G VI  +
Sbjct: 493  NNPANPTPLSKAIEEEPRLQEEADK--EPVVARLLDIAQKIEGLYRHASTHAAGIVIGDR 550

Query: 495  PLDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHL 554
            PL +LVP+      +  V Q++   ++  GL+K D L L  L+ L+   D +   RG  +
Sbjct: 551  PLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVA-KRGIKV 609

Query: 555  TLATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQ 614
             LA IP ED  TY M+SR ET+GVFQ+ES      L  +RP    D++  VA+ RPGP++
Sbjct: 610  DLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPME 669

Query: 615  GDMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLR 674
               +  Y  R+  +E +    P +  + + T GV ++QEQVM++A V + Y+ GEAD LR
Sbjct: 670  N--IPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLR 727

Query: 675  RSMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLC 734
            R+M   K    ++  RER V G ++NG +   A  IF+ +  F +YGF +SHAA++A++ 
Sbjct: 728  RAMGK-KIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVS 786

Query: 735  YASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPD 794
            Y ++++K H P  F  A +          +   Q+A R GIEV    V       +    
Sbjct: 787  YQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSV-----QTSFRQF 841

Query: 795  AEGTLAIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAG---LDARARARLADG 851
              G   I   L  ++G+ E   + + Q R ++P+ ++ED CLR     ++ R    L + 
Sbjct: 842  ETGENRIYYSLAAIKGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINA 901

Query: 852  GALRALASDRHQARWQVAAVQPQLPLFADVQALPEE----------PVQLPVPTV----- 896
            GA      DR +    +  +     +  + + + +           P +L +P       
Sbjct: 902  GAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLP 961

Query: 897  GEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQ-GVEHGDNIA--VAGLVVGRQ 953
             E L+ +YQ LG  L  HPL   R  L  L  ++ ++    V+ G +    +AG V G+Q
Sbjct: 962  SEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQ 1021

Query: 954  RPQTASG--VTFVTLEDEHGMVNVVVW-RALAERQRRALVGSQL-LKVSGRLEQEN-GVR 1008
              +T +G  +  VT  D  G    V++   LA+ +    VG  L + V      E  G+R
Sbjct: 1022 ERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAEERPEGIGLR 1081

Query: 1009 HLIARRLEDVSPLLQ-GLDVRSRD 1031
               A+ LE+ S  +Q  L V  RD
Sbjct: 1082 IQTAQSLEEKSVQMQKALRVYVRD 1105