Pairwise Alignments

Query, 1385 a.a., Rhs-related protein from Pseudomonas putida KT2440

Subject, 1464 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  722 bits (1863), Expect = 0.0
 Identities = 452/1208 (37%), Positives = 635/1208 (52%), Gaps = 82/1208 (6%)

Query: 102  CDKHPG--PVQIAEGSTNVFINSVAAARKGDKLTCGATI-SGG--SDNVIIGGGTYRYLP 156
            C +HP   P  +AEGS  V IN   A R GD+  C AT+ S G  S NV IGGGT     
Sbjct: 185  CARHPPMPPQLLAEGSDKVTINGQPAVRSGDRSMCDATVVSSGLISPNVTIGGGTVVVQE 244

Query: 157  VDDEVPEWLRTTVDVLMAIAGAAGGIAQLIKAGTQAGMKAVMPCALKFTAGFVAGEVASR 216
            +       +   ++ LM + GA G               + +PC L      +AG   + 
Sbjct: 245  IRSGKTPGVGLAIEALMMLKGAKGKTL------------SNLPCML------LAG--VTS 284

Query: 217  YVVEPVARKAIGGLVG--NPVDLTTGRKLI--PDEIDFSLPGLMPIEWSRFYAS-DLTVD 271
            Y V      A    +G  NPV   TG K++    E+DF LPG++PI+W RFY S D    
Sbjct: 285  YAVSQAMGAAANATMGSPNPVHAATGAKVLGGETELDFVLPGILPIDWQRFYNSRDERRT 344

Query: 272  SVLGRGWVLPWEQSLR-----RQGAFIYLTDNQGREVPFVTLQPGQRIYNPHEQVYLVCT 326
             + G GW +P+E S+        G  +  TD QGR +    +  G  +++P E + +   
Sbjct: 345  GMFGAGWSVPYEISVEILLHPDGGEELLYTDEQGRRINLGGISLGSAMFSPGEGLSIRRH 404

Query: 327  EGGHYILQTLDNLFFYFGEVPDTNTEVPLQRIENVLGHFLHFTRTPDGTLTDISATGGTR 386
              G  ++++ D ++  F   P   + + L ++ +   H +H      G L  +       
Sbjct: 405  RNGQLLIESADGIYRLFESTPANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDNLDL- 463

Query: 387  VHLHYDNPLGRLTDIKRVVNNEAVETLTQYRYDEHGQLSAVINRNGDTVRSFSYADGL-M 445
            V +      G ++ I+RV  ++  E L  Y Y+  G L+ V +  G   R FSY  G  M
Sbjct: 464  VQVELIRDQGHVSKIERVYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAGRRM 523

Query: 446  VTHSNALGLGCHYRWQTLGDKP-RVVEHWTSDGEHYHFRYDLDSRTSWATDVLGRELEVQ 504
            V H    GL C Y W  + D   RV  HWT +G+ YHF YDL +  +  TD + R     
Sbjct: 524  VEHQLPAGLRCFYEWALVEDVEWRVSHHWTDEGDAYHFEYDLSAGVTRITDGMQRISIRH 583

Query: 505  YNADHRVVASRDYGGERYAIELDEHGNMVGLTLPDGNRLQFKYDEFSRLLEETDPLGRKT 564
            +N  H++    D  G+ +  + ++   ++G T P G R ++ YDE   L+ E DPLGR+ 
Sbjct: 584  WNNQHQITKYSDNLGQTWLFDWNDERQLLGATDPQGGRFEYSYDETGNLISEIDPLGRRD 643

Query: 565  QYEYHHLTTLVTQVSYPDGSTWRARFDDKGNLLAEFDALGQMTEYLNSDDGLPHTIIDAT 624
               +     L    + P   +W  ++D +GN +A  D +G +T Y     G P  IIDAT
Sbjct: 644  STMWLEHWALPLVETNPANHSWHYQYDQRGNCIAATDPMGHITRYRYDSHGHPVEIIDAT 703

Query: 625  YKSKYLWWNTLAQVERYQDCSGKSTYYRYDERQHLVAVTDALNQTTTLARKPDGEVLRIS 684
             KSK L W+   Q+  + DCSG ST + YDER  L  +TDAL + T  +    G ++   
Sbjct: 704  GKSKKLRWSPFGQLVEHIDCSGYSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQ 763

Query: 685  HPDGTTESFTYNVYGQVLSHTDGKGQTTRLMRTARGLPSSRQDAKGQRVRYEYDKAMRLT 744
             PDG TE +T +  G +L +TD  G TT      RG    R DA G+RV++ YD   RL 
Sbjct: 764  LPDGRTEQYTRDTSGLLLGYTDPAGHTTLYQHNRRGQVCQRTDAYGRRVKFAYDSYGRLK 823

Query: 745  ALVNENNATYSFAYDASDRLSEEVRVDNLTRRFSYDVGGHLTRLDEI-GYGEN-----AE 798
            AL+NEN  +Y F +DA DRL+E+  +D   +R++YD+  H+T +  +  + +N     AE
Sbjct: 824  ALINENEESYQFVWDAGDRLTEQRDLDGSAKRYTYDLLNHMTAMTAVPAHFDNTLVNAAE 883

Query: 799  RPER--HTLFERDAIGRLIAKLNSDAQQRFTYDDGDRLLSIERQPTGIGKQLGITEEKLE 856
             P    H + ERDA+GRLIAK+  D +  + YD  D+L ++          L    + L 
Sbjct: 884  TPSPIVHRM-ERDAVGRLIAKMTDDGRTEYVYDSLDQLCAV------TFTDLSGDTQVLS 936

Query: 857  YAYDLLGRLTKEISPDGTLGYEYDPLSNLTTLTLPDGRKVNHLYYGSGHLHQLNLDGQVI 916
            +AY  LGRL  E SP GTL + YD L NLT   LPDGR +N LYYGSGHLHQ+NLDG+VI
Sbjct: 937  FAYAPLGRLLTEQSPMGTLQHHYDELGNLTQTQLPDGRWLNRLYYGSGHLHQINLDGEVI 996

Query: 917  SDMERDDLHREVYRTQGKLTSCFGYDAMGRKAWQFASTLPADKLSQVHNTGINTSLLVEH 976
            SD ERD LHREV RTQG+L++   YD  GR        L +      H   +  + + +H
Sbjct: 997  SDFERDRLHREVLRTQGQLSTRSEYDRSGR--------LRSRHCRHSHQPMLTPAAMQQH 1048

Query: 977  AYNPIHRRYQYDPAGELVRTLDK---LRGEIKYEYEANGQLRSRDTGSLIGSEEFRYDPA 1033
                    ++YDPA  L   LD+    +      Y+A G++ +     L   E F YD A
Sbjct: 1049 --------FEYDPADNLTGKLDQQPTTQQRQLLHYDATGRITASQDNLLGQRETFTYDAA 1100

Query: 1034 ANRLDFNARQFDKVKDNRIKQWRDQEYRYDPWGNLIEKRSGHSKLQHFSYDCENRLVRAE 1093
            AN LD        V  N++  ++D+ YRYD +G +IEKRS    +Q F+YD E+RL+   
Sbjct: 1101 ANLLDSPHPGAGLVVHNKLMTYQDKRYRYDGFGRMIEKRSTSRGVQRFAYDAESRLIEVR 1160

Query: 1094 TLVNGKLESQGEYRYDSLGRRIAK-QAEING-EVEQKRFLWQGLRMLREETPGQSILYLY 1151
               NG +    +  YD LGRRI K +  I+G  + + RF W GLR+L+E    Q+ LY+Y
Sbjct: 1161 N-ENGNVV---KMHYDPLGRRIKKTEHGIDGYPLSETRFSWDGLRLLQEHKYSQTSLYVY 1216

Query: 1152 EPGSYAPLARVDQVEGEGQKVYYFHTDQIGTPLELTDSEGEIVWQATYRSWG-TIETLSI 1210
            E   Y PLARVD + G+ QK+ Y+H D  G P +L++++G IVWQATYR WG T+E +  
Sbjct: 1217 ENEGYEPLARVDGI-GQLQKLRYYHNDLNGLPAQLSEADGHIVWQATYRVWGNTLEEVRE 1275

Query: 1211 KEV--DQNLRFQGQYFDAETGLHYNTFRYYYSEVGRYVTQDPIGLDGGLNLYRYGQNPAG 1268
                 +QNLRFQGQY D ETGLHYNTFR+Y  ++GR+ + DPI L GGLNLY YG NP  
Sbjct: 1276 PHYIEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPISLMGGLNLYLYGFNPFS 1335

Query: 1269 WIDPWGWE 1276
            W+DP G E
Sbjct: 1336 WVDPLGLE 1343



 Score = 48.9 bits (115), Expect = 4e-09
 Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 4   AARFGDEISHTSALGGFLIGAALGIALVATVAIATFTCGFGVALLAGLAAGIGGSLLTAA 63
           AAR GD ++HTS +   L G     A VA  A+AT      V +     AGIGG +L A 
Sbjct: 7   AARMGDALTHTSMMADILGGVLEVAANVAITALATAAVAAAVGVTIA-TAGIGGCILGAV 65

Query: 64  GEAIGSMFSSPSGTITTASP--NVFINSRKAARVEKSIGACDKHPGPVQIAEGSTNVFIN 121
              +  M  S +G     S     F N+     VE +I            A GST+ F+N
Sbjct: 66  VGIVVGMAMSKTGADKGLSKMCESFANALFPPVVEATI------------AVGSTDTFVN 113

Query: 122 SVAAAR 127
           S+ AAR
Sbjct: 114 SIPAAR 119