Pairwise Alignments

Query, 618 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  261 bits (667), Expect = 7e-74
 Identities = 199/615 (32%), Positives = 300/615 (48%), Gaps = 51/615 (8%)

Query: 8   MLAPQNRRLFKLNILTQTANDEFLLEHFSGTEELSKLYEFDLALLSQQSDVKLKSLIGSQ 67
           M AP N+  F L +  + +  EF +  FSG E +S+ Y FD+ L+S+Q D+ L+SL+  Q
Sbjct: 1   MFAPANQSAFTLTLDGEPS--EFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQ 58

Query: 68  ATVEIELSNGSFRHINGYVQRFSTQGSDGGYVRYAAVLGPWLWMLTCRFDTRIFQEKSVQ 127
             +  +      R ++G V R +   S     RY   L P L  L      RIFQ K+V 
Sbjct: 59  VYLGFDDRG---RGVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVP 115

Query: 128 AVVSEVFAGFGTLA-KYEFRVSKPLKSHSYITQYRESDFNFVQRLLESEGLFYYFEHTAD 186
            +V++V  G G    ++EFR+S       Y  Q+ E+D  F+QRL    G+ Y+F+H++ 
Sbjct: 116 QIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSA 175

Query: 187 SHLMVITDDSSTLLPLPEQPQIRYHSASVTETADSITQWQSTRQLQSGQIAVRTFDYRQP 246
            HL+V  DD +  +           S  V +T   I ++    Q ++  + +R +D+R+P
Sbjct: 176 GHLLVFGDDQTVFVQADPPTPYTPGSGMVADTP-VIKRFAVQVQARTTGVNLRDYDFRKP 234

Query: 247 RNFLPVTMQSLNQQGDVDRFEIYDFPGQYT---HGSYEDGEAIVRNRIEALELMGKTFYG 303
                + ++S      +   E   +PG +    HG Y     + R+R +      +   G
Sbjct: 235 S----LALESEVTGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDY-----RVARG 285

Query: 304 ESNCRAMKPGYTFELTQHYLHDTGAAENRKFLLLSVEHRGSNNYMT---------GD-QA 353
             +  A+  G   +L  H   D     N  +L+  V H G    +          GD + 
Sbjct: 286 SGDEPALGSGRFLKLAGHPREDW----NDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQ 341

Query: 354 GYVNRFVCVRKKIAYRPQLNTR-KPLINGPQTAIVVGPPGEEIFTDELGRVKLQFHWDRQ 412
           GY N F        +RP +  + +P I G Q A+V GP   EI  DE GRVK+Q  WDR 
Sbjct: 342 GYRNEFSATPWDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRD 401

Query: 413 GQFNDQSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSTNTPP 472
           G+ ND SSCW+RVA   A   +GS+ IPRVG EV+V F++G+ D PL+MG L N+    P
Sbjct: 402 GEHNDHSSCWLRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVP 461

Query: 473 WSLPANKTQSGFLTRSMKGDGGTANFFRFEDKAGAEQIIMHAERNM------DTEIELD- 525
             LPA+KT+S F ++S  G GG  N  R ED+ GAE+I + A+R+       D  + +D 
Sbjct: 462 LDLPADKTRSVFRSQSSPGGGG-YNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDG 520

Query: 526 ETHD--VGNNRSITVGGTHTETVKKDTVV-----QVTEGSYTLQVD-NQFIQVAAKQHII 577
           E+H    G    IT G   T+  + D ++     QV  G  T+Q+   Q + +     + 
Sbjct: 521 ESHHELQGEELRITHGNRLTDLKQDDHLMVGGSRQVRAGQ-TIQIGAGQSVVIEGGATVT 579

Query: 578 LQVGDSSITLTPEGI 592
           +Q G  SITL   GI
Sbjct: 580 IQAGGQSITLCAGGI 594