Pairwise Alignments

Query, 356 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 347 a.a., type VI secretion protein from Pseudomonas simiae WCS417

 Score =  161 bits (407), Expect = 3e-44
 Identities = 110/332 (33%), Positives = 165/332 (49%), Gaps = 26/332 (7%)

Query: 13  IDQARAEPHRFEFFQLVRLLRLHYSRTGRMDLATRPHEDPLRFRTQLSLAFPASEVSDLH 72
           +D    EP  ++FFQ +R +        R+  + R  +DPLR   Q    F  + ++ + 
Sbjct: 15  LDAMHQEPWEYDFFQALRRIECESPDLPRLGHSLRLADDPLRLGQQADCTFAPATLASVD 74

Query: 73  FEREGKVSPAGLPLSEVQVTFMGLVGPSGVLPRPYTELLLERHVQYRDDAAHAFLDIFSH 132
              +GK  PA L     +  F GL GP+G LP   TE + ER     D  +  FLD+F H
Sbjct: 75  PGGDGK--PARL-----EQFFFGLGGPNGPLPLHITEYVRERQRNNADSTSKQFLDVFHH 127

Query: 133 RMTTLFYEAWQKYKFHIEHERNGTSGFDGYLLNLVGLGPRAQKLKFEEQPSALRRELFS- 191
           R+ +LFY AW + +  + H+R     +   L  L G G           PS L + L   
Sbjct: 128 RLLSLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRG----------MPSLLNQGLIPD 177

Query: 192 ----YFAGLLSQKPRNALNLERMLGFYFSLPIKVQPFAGRWLHLQPEQCTQLGRRNAQLG 247
               +++G LS + R    L+ +LG YF LP++++ + G+WL L PE+ +++     +LG
Sbjct: 178 TAKLHYSGHLSAQTRYPDGLKAILGEYFGLPVEIEEYVGQWLEL-PER-SRVSVSANRLG 235

Query: 248 HSAVAGNRVWDYQSCIRIELGPLSLADYQRFQPGTACYRKLVELVRFYIGAELDFEIAPR 307
                G+ VWD Q   RI LGPL+L DY    PG   + +LV  V  Y+G ELD+++   
Sbjct: 236 VDFCLGSFVWDRQHKFRIRLGPLTLEDYMGMLPGQQPFNELVAWVAEYLGHELDWDLNLV 295

Query: 308 LKREAVPRAQLGRSGNVALGWLGWLKRPGRDA 339
           L++  VP  QL  +G   LG+  WL  P  DA
Sbjct: 296 LQQPEVPALQL--NGQFRLGFNTWLGSPAHDA 325