Pairwise Alignments

Query, 1267 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 1199 a.a., type VI secretion system membrane subunit TssM from Variovorax sp. OAS795

 Score =  204 bits (518), Expect = 5e-56
 Identities = 179/585 (30%), Positives = 278/585 (47%), Gaps = 59/585 (10%)

Query: 13  LLLPLLWLA--SLLICWLAAPLVP---WLRHHVPEALAIISACFLLVIVLRQ-YQRIR-- 64
           LLL +L L   SLLI W+  PLV    W         A++    +L++VLR  Y+R R  
Sbjct: 13  LLLTILALVIVSLLIWWIG-PLVKIGAWAPLESELVRALLIGAIVLIVVLRALYRRWRTR 71

Query: 65  --AEHNLENLLQIEVDRSWNATGEFRDQQVLRERLKHAITMLRTDRSAGGG--------- 113
             ++H  + L++    ++        +Q++L  R   A+  L+  R    G         
Sbjct: 72  RASQHLTDGLMKAPAAKTDAPVNG--EQKILDTRFSEAVATLKQMRLHAAGKKPGWRDWL 129

Query: 114 ---GKAALSDLPWYLVVGMSAAGKTSLLTHSGLSASIAT-----ANDSESGTQHCDWYFS 165
              G + L DLPWY+ +G   AGKT+ L +SGLS  +A      A     GT++CDW+F+
Sbjct: 130 SISGGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGGTRNCDWWFT 189

Query: 166 PDAVMIDTAGRYLRDDQSASE----FSAFLRMLRKQRGKAAINGLVLVVSLPELLAANSD 221
            +AV+IDTAGRY   D   SE    +  FL +L+K R +  +NG+ L VS+ +LL+   +
Sbjct: 190 DEAVLIDTAGRYTTQDSHQSEDKSAWEGFLGLLKKARPRRPLNGVFLTVSVADLLSQGPE 249

Query: 222 ERNALAAQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFG 281
           +R  LAA + AR+ E    L    PVY++++K+D L GF+  FD L   +R Q  G T  
Sbjct: 250 QRTQLAASIRARLLELDAKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQRAQVFGFTLA 309

Query: 282 LSE-IRTNGLHAVLQTRLKKLQAHIRQHVDAQMIA-LGAEADST----LLNFPQYFAALS 335
             E ++T      L T   +  A +   V+  +IA +  E D T    +  FP  F ++ 
Sbjct: 310 AGENVQTE--EKGLSTAFNREFALLHNRVNDGLIARMQRETDGTRRAAIFGFPAQFGSIG 367

Query: 336 GVLEQFLEHFTRGHRGGAPLLLRGLYFTSALQNGQQLGQVYEDVIADEFALQAAYDEQAG 395
            +L   L+    G R   P  +RG+YFTS  Q G  + +V    ++  F L     E+A 
Sbjct: 368 SMLSDLLDQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGS-LSRSFGL-----ERAM 421

Query: 396 HVGKALGNRSYFITDTFRQVIFPDRDLILYQSRLGRQAAFSPLLLGLAAATGL---LFIG 452
              +    RSYF+T   R+V+FP++ L     +L R+   +  + G+AA T +   L  G
Sbjct: 422 LAPQKSSGRSYFLTALLREVVFPEQRLAGANVKLERR-RHALRMAGVAAMTLVTLALLAG 480

Query: 453 WQALSFANNRQWLDSLRGQLAHIEQ----AADREQQLA-AGKGLEVLREQMANVKAHRLQ 507
           W   S   N  +L S+  ++    Q       R Q L      L+ LR+ +     +R  
Sbjct: 481 W-GYSTLQNVNYLKSVEARVEPARQNLAALPSRVQNLVEVAPVLQSLRD-IWKTPDNRQG 538

Query: 508 GVPLQLGGGLYQGEAIHQVTRSAYLAQLRSQALEPIARSLQVQMR 552
             PL +  GLYQG+ +       +   L    L  IA+ ++ Q+R
Sbjct: 539 DEPLSMTLGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLR 583



 Score = 67.8 bits (164), Expect = 6e-15
 Identities = 132/629 (20%), Positives = 240/629 (38%), Gaps = 65/629 (10%)

Query: 625  LSEEMLGRLDEQQVASIIEAYNTLKLYLLLTEPQAHPDPAFVAASLPQAWASAAGEGTPA 684
            +++ +  +L   Q  ++   Y  LK YL+L +P+ H D   + A +   WA +   G P 
Sbjct: 574  IAKRIEDQLRTAQKDNLEYTYEALKSYLMLYQPE-HFDAEALKAWITLDWARSLDRGIPE 632

Query: 685  DAGVIAENAPLYVQLLEQGQAPSLPRNEQLINETRQNLKSFMISSSLVDREYLRLQLESS 744
            D     E+  L V + +      L  +E L+   R  L S+ +   +  R  L+ Q  ++
Sbjct: 633  DQRQALED-QLDVLIAQGPPRSPLKMDENLVRSVRAVLASYPLEQRVFSR--LKRQ-RAT 688

Query: 745  RQFPALSLNDLVPQPGRALLYG-------TAGVPAIYTRQGWDTFVKPELIKLVSGNLRN 797
            +  P  S+      P   L++        T GVP ++T  G+    + E + +++G L  
Sbjct: 689  KDIPGFSI-ATAAGPSAPLVFERISGKPLTEGVPGMFTYDGYHKRFQNE-VTVLTGLLAQ 746

Query: 798  ESDWVL--DGEGGDAL--VQKANFVREFMTR-YKRDYTQAWYKMVSSVGVRHFADLASAT 852
            E  WVL  D    D +  V     + + + R Y  +Y + W  +++ V +   + L    
Sbjct: 747  EDPWVLGQDRSAADRMRDVAALGALTDRVRRLYLAEYVKVWETLLADVRLIRASGLEKNI 806

Query: 853  RELGLLSDVQNSPVKNLLQAVNDNTQWDLPVKQA--IPAPGTSRDDGFWSKVTGLFDAND 910
                +LS V  SP+ N L+AV   T   +P  Q   + +  T+        +  LF  + 
Sbjct: 807  EAARILSGV-GSPLANFLRAVVKETTL-IPADQPKDVVSKATATVANTRKGLEDLFGGDP 864

Query: 911  TLPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAALRKLKVRMNNI- 969
                     + ++ D     RFEP+ R+             +D  L    ++ V +N + 
Sbjct: 865  NKAVASGKRIESIVD----DRFEPLRRLVTP--VAPNQPAPIDDALKLFNEVYVYLNAVD 918

Query: 970  -----QRSQDVGKSSKQLISETLEGQPSEITTVRNYVESSVDTSQDGLSRSLQGLFSLPI 1024
                 + S   G  + +L S+   G+  E   VR  VE   + SQ G ++          
Sbjct: 919  TAVKGRTSPPPGDVAGKLKSDA--GRLPE--PVRTMVE---NLSQSGAAQ---------- 961

Query: 1025 QYAWATLRDPAGEQIAKAWAQQIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFVDPDSGL 1084
              A    R    + +     + + +   + +A RYP  GSS+ +   +D  +      GL
Sbjct: 962  --AQVAERGNLSQDL-----RPVTEFCNRAIAGRYPFVGSSKRDVLPEDFGQMFGA-GGL 1013

Query: 1085 LPAFKRNEIGNL--AGGEGLGVGDGKGPALVNPGMLNSIDKASSVGQVIASLSDRDNGFE 1142
            +  F +  +  L     +            V    L   ++A+ +  +      R     
Sbjct: 1014 MDDFFQKRLAALVDTSTKPWRYKPVAERGAVTTQALAQFERAARIKDIFFRGGGRGPSMR 1073

Query: 1143 IMLEP---SANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSTAPGARLDVVTLSGTRVT 1199
            +  +P    A  T  +  +DGQ   Y +G        WPG   +   R+ V   S T  +
Sbjct: 1074 LDFKPVEMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQVRIQVSPPSTTGSS 1133

Query: 1200 VFDFPGRWGLLRMNESARVDDLDGIQQRF 1228
                 G W L R  +  +++  D  ++ F
Sbjct: 1134 GSAVDGPWALFRALDDGQLEAGDAPEKFF 1162