Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5

 Score =  548 bits (1412), Expect = e-160
 Identities = 312/709 (44%), Positives = 422/709 (59%), Gaps = 44/709 (6%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMA---WQGQNLRDILV 194
           FS N P GACP C GLG    +    +VPD + ++++ A+A W  +   + GQ L  +  
Sbjct: 296 FSFNNPFGACPACDGLGVEQTIDPDLVVPDKARSLKQGAIAPWAKSTSPYYGQTLDALAK 355

Query: 195 TLGYDVDIPWRDLPQAQRDWILFTE--ETPTAPVYAGLTPAQTREALKRKLEPSYQGTFM 252
              + +++P+ DLP+  R+ +LF    E  T     G+   +T +            TF 
Sbjct: 356 HYHFKLNVPFADLPEQAREVLLFGSGSEKITFHYDDGMRAYETSK------------TFE 403

Query: 253 GARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLS 312
           G  R +   +  + S   R+ +++Y     C +C G RLK EALAV  AG  I E+  LS
Sbjct: 404 GVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLKPEALAVKIAGRHIGEIGELS 463

Query: 313 LQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERST 372
           ++A A  F  + A   LT +Q+E+       A RI KE+ ER+  LLD+GL YL L RS+
Sbjct: 464 VRAAAGWFESLPAQ--LTDKQNEI-------AGRILKEIRERLRFLLDVGLEYLTLARSS 514

Query: 373 PTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVV 432
            TLS GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D+E L   L+ L+  GN+V VV
Sbjct: 515 GTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKHLRDLGNTVIVV 574

Query: 433 EHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL---FDAPVQATR 489
           EHD D +  AD +VDVGP AG HGG I+  G PA +     S T  YL       V A R
Sbjct: 575 EHDEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLTGELSVGVPARR 634

Query: 490 APRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGH 549
            P   R  LKL G   NNL N++A  PLG FT +TG+SG GKS+L+   L + V   L  
Sbjct: 635 KPNPKR-MLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYKAVARRLNG 693

Query: 550 AEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHV 609
           A +   P    LE             GL  + +++ +DQ PIGRTPRSN ATYTG F  +
Sbjct: 694 ASEAPAP-FDKLE-------------GLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPI 739

Query: 610 RKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARY 669
           R+ FA   +AKA+G+ AGRFSFNV  GRC  C+G+G + +E+ F+P VY  C  C+G RY
Sbjct: 740 REWFAGLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRY 799

Query: 670 NPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELS 729
           N ETL V+++  +IA VL +TV++  Q F   P  R  L+ L  +GL Y+++GQ AT LS
Sbjct: 800 NRETLEVTFKNKSIADVLDMTVEEGAQFFKAVPSVREKLETLHRVGLDYVKVGQQATTLS 859

Query: 730 GGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHD 789
           GGEAQR+KL+ EL R A G TLY+LDEPT GLH  D+ +LL  L+ LVE G+SVVV+EH+
Sbjct: 860 GGEAQRVKLSKELSRRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVEQGNSVVVIEHN 919

Query: 790 MRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           + V+  +DW++D+GP  GD GG++VV+GTP+ VAA   S T  FLA+ L
Sbjct: 920 LEVIKTADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHTGRFLAEVL 968



 Score =  143 bits (360), Expect = 6e-38
 Identities = 67/120 (55%), Positives = 95/120 (79%)

Query: 5   PTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFES 64
           P   +  + VRGAREHNLKN+D++IPRD+LVVFTG+SGSGKSSLAF T+YAE QRRY ES
Sbjct: 21  PRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVES 80

Query: 65  VAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
           ++ YAR+ ++ +  PDVD IDGL PA++++Q+  + + RS+VG+VT +   +R+L++R G
Sbjct: 81  LSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTG 140



 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 8   PSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRY---FES 64
           P   +++ GAR +NLKN+  +IP       TGVSG GKS+L   TLY    RR     E+
Sbjct: 638 PKRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYKAVARRLNGASEA 697

Query: 65  VAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
            AP+ +          ++ ++ L   + + Q     + RS+  + T   + IR  ++   
Sbjct: 698 PAPFDK----------LEGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWFA--- 744

Query: 125 HYPPGQAMLY-AEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLT 171
             P  +A  Y A  FS N   G C  C G G +    E   +PD  +T
Sbjct: 745 GLPEAKARGYGAGRFSFNVKGGRCEACQGDGVI--KIEMHFLPDVYVT 790



 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 482 DAPVQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLE 541
           +APV+    PR+    L + G   +NL N+    P       TG+SGSGKSSL    +  
Sbjct: 14  EAPVR--EVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTI-- 69

Query: 542 LVGAHLGHAEQRSEPEAQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNL 599
                  + E  S    Q LE   +P+          +  +   + ++QK   + PRS +
Sbjct: 70  YAEGQRRYVESLSAYARQFLEMMQKPDVDQ-------IDGLSPAISIEQKTTSKNPRSTV 122

Query: 600 ATYTGLFDHVRKCFAAT 616
            T T ++D++R  +A T
Sbjct: 123 GTVTEIYDYMRLLWART 139