Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45

 Score =  480 bits (1235), Expect = e-139
 Identities = 296/759 (38%), Positives = 409/759 (53%), Gaps = 90/759 (11%)

Query: 138  FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM--AWQGQNLRDILVT 195
            FS N+P GACP C GLG       A +V  PSL++   A+  W     +    +  +   
Sbjct: 306  FSFNSPVGACPSCDGLGHREVFDPARVVAFPSLSLASGAIKGWDRRNGYYFSMIESVAKH 365

Query: 196  LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMG-A 254
              +DVD P+  LP + +  +L             +           K  P ++G     A
Sbjct: 366  YKFDVDAPFESLPASVQQVLLHGSAAEEIKFNYTMESGNFAGKKLTKKHP-FEGIIPNMA 424

Query: 255  RRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAG------------ 302
            RRY       + S  +R+ +A++ +   CP C G RL+REA  V                
Sbjct: 425  RRY-----RETDSVMVREDLARFRNLQPCPDCGGSRLRREARNVFLVDESARPADGGEPP 479

Query: 303  -LDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDL 361
             + I ELSHL+L+     F+ +           +L   K   A ++ +E+  R+  L D+
Sbjct: 480  RMAIFELSHLTLRDSLAWFQTL-----------KLRGAKADIADKVVREIGLRLKFLNDV 528

Query: 362  GLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQR 421
            GL YL+L+RS  TLS GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D++ L   L+ 
Sbjct: 529  GLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKH 588

Query: 422  LKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLF 481
            L+  GNSV VVEHD D +  AD ++D+GP AG HGG ++  G  A ++    S T  YL 
Sbjct: 589  LRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSANPDSLTGQYLS 648

Query: 482  ---------------------------------DAPVQATRAPRQARDW--------LKL 500
                                              +P    RA R+A           +++
Sbjct: 649  GTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLATQTDLQEIRV 708

Query: 501  EGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEA-Q 559
             G T NNL N+S AFP+G  T VTG+SGSGKS+LV+  L   V   L  A +  EP A +
Sbjct: 709  VGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRAHE--EPAAHE 766

Query: 560  SLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQA 619
            S+E             G+    +++ VDQ PIGRTPRSN ATYTGLF  +R+  A T  A
Sbjct: 767  SVE-------------GIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTA 813

Query: 620  KAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQ 679
            + +G+  GRFSFNVA GRC  C+G+G V VE+ F+P VY PC  C G RYN ETL V ++
Sbjct: 814  RERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYK 873

Query: 680  GMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLA 739
            G NIAQ+L++TV+ A +     P   R L+ L D+GL Y++LGQ AT LSGGEAQR+KLA
Sbjct: 874  GKNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLA 933

Query: 740  TELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWV 799
             EL +   G TLY+LDEPT GLH  DI+ LL  L++L ++G+++VV+EH++ V+  +DW+
Sbjct: 934  LELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWL 993

Query: 800  IDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
            ID+GP  G  GG VV  GTP+ +AA   S T  +L + L
Sbjct: 994  IDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032



 Score =  140 bits (354), Expect = 3e-37
 Identities = 70/131 (53%), Positives = 97/131 (74%), Gaps = 6/131 (4%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I +RGAR HNLKN+D+DIPR+ LVV TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 40  ISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 99

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG------H 125
            +  +  PDVD I+GL PA++++Q+  + + RS+VG+VT +   +R+LY+RAG      H
Sbjct: 100 FLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPDH 159

Query: 126 YPPGQAMLYAE 136
           + P QA   ++
Sbjct: 160 HLPLQAQTVSQ 170



 Score = 60.1 bits (144), Expect = 6e-13
 Identities = 53/161 (32%), Positives = 69/161 (42%), Gaps = 21/161 (13%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           IRV GA  +NLKN+ V  P   L   TGVSGSGKS+L   TLY    R  +       R 
Sbjct: 706 IRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLY-------RA 758

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SRAGHY 126
             +      V+ I+     + + Q     + RS+  + T L + IR L      +R   Y
Sbjct: 759 HEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERGY 818

Query: 127 PPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
            PG+       FS N   G C  C G G V    E   +PD
Sbjct: 819 GPGR-------FSFNVAGGRCEACQGDGVV--KVEMHFLPD 850



 Score = 47.4 bits (111), Expect = 4e-09
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 494 ARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQR 553
           A+  + + G   +NL N+    P      +TG+SGSGKSSL    L         + E  
Sbjct: 36  AQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTL--YAEGQRRYVESL 93

Query: 554 SEPEAQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRK 611
           S    Q L+  D+P+      V  GL      + ++QK     PRS + T T + D++R 
Sbjct: 94  SAYARQFLQLMDKPDV----DVIEGLSP---AISIEQKATSHNPRSTVGTVTEIHDYLRL 146

Query: 612 CFA 614
            +A
Sbjct: 147 LYA 149