Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 877 a.a., Excinuclease ABC subunit A paralog of unknown function from Variovorax sp. SCN45

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 590/855 (69%), Positives = 670/855 (78%), Gaps = 29/855 (3%)

Query: 11  FIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYAR 70
           F+RVRGAREHNL+N+DVDIPRDALVVF+G+SGSGKSSLAF TLYAEAQRRYFESVAPYAR
Sbjct: 11  FVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVAPYAR 70

Query: 71  RLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGHYPPGQ 130
           RLIDQVGVP VDAIDGLPPAVALQQQRGTP ARSSVGSVTTLSS +RMLYSRAG YP  Q
Sbjct: 71  RLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAGDYPARQ 130

Query: 131 AMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMAWQGQNLR 190
            MLYAEDFSPNTPQGACP CHGLGRV+EVTE +MVPD SL+IRERA+AAWP AW GQNLR
Sbjct: 131 PMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAWPPAWHGQNLR 190

Query: 191 DILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGT 250
           DILVT+G DVD PWR+LP+  R+WILFTEE PT PVYAG TPA+TR A++ K+EPSYQGT
Sbjct: 191 DILVTMGIDVDKPWRNLPKKTRNWILFTEEQPTVPVYAGFTPAETRAAVRSKMEPSYQGT 250

Query: 251 FMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSH 310
           FMGAR+YVLHTF  + SA M+ R A++M    CP C GKRLKREAL+V FAG DI E++ 
Sbjct: 251 FMGARKYVLHTFATTHSALMKNRAARFMVGGDCPQCHGKRLKREALSVRFAGHDIGEIAR 310

Query: 311 LSLQALAEVFRKVA-------AADYLTQQQD----------------------ELTLEKR 341
           +SL  LA+V R VA       AA   T++                          + EKR
Sbjct: 311 MSLARLADVLRPVARGESPGAAAPVATRRASLRQAAPGKGASHASAPDVRRTPNQSAEKR 370

Query: 342 LAAQRIAKELLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLD 401
           +AAQRIA E+LER+ TLL+LGLGYL+L+RSTPTLS GELQRLRLATQ+ S LFGVVYVLD
Sbjct: 371 IAAQRIAHEMLERVTTLLELGLGYLSLDRSTPTLSPGELQRLRLATQIRSNLFGVVYVLD 430

Query: 402 EPSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILY 461
           EPSAGLHPAD EAL  AL  LK++GNS++VVEHDLD MRRADWLVDVGP AGE GG +LY
Sbjct: 431 EPSAGLHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLY 490

Query: 462 SGPPAGLAEVQQSCTRTYLFDAPVQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFT 521
           SGPP GL  V QS T  YLF A     R PR  R WLKLEG+TRNNL NL+AAFPLG  +
Sbjct: 491 SGPPEGLRHVAQSHTARYLFSAHAGPVRPPRTPRGWLKLEGLTRNNLSNLAAAFPLGVLS 550

Query: 522 AVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIK 581
           AVTG+SGSGKSSLVSQAL+ELV AHLGH    +E E           +SGH+  G+  I+
Sbjct: 551 AVTGVSGSGKSSLVSQALVELVAAHLGHEPPPAEEEEGEEPAALASRTSGHIVQGMEGIR 610

Query: 582 RLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANC 641
           RLV+VDQKPIGRTPRSNLATYTGLFDHVRK FA T  AKA+ FD GRFSFNVAKGRC  C
Sbjct: 611 RLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKARRFDPGRFSFNVAKGRCPTC 670

Query: 642 EGEGFVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQ 701
           EGEGFVSVELLFMPSVYAPCP C G+R+N +TL+V  +   IA VL +TVD+A   F   
Sbjct: 671 EGEGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFEAD 730

Query: 702 PPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGL 761
               R LQ+L+ IGLGYLRLGQPATELSGGEAQRIKLATELQR  RG TLYVLDEPT GL
Sbjct: 731 VAIERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTTGL 790

Query: 762 HPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQV 821
           HP D+D+L  QL+ LV++G++V+V+EH+MR+VA  DWVID+GPGAG  GG++V SG P  
Sbjct: 791 HPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAPSD 850

Query: 822 VAACTDSRTATFLAK 836
           VA    SRTA +LA+
Sbjct: 851 VARSKKSRTAPYLAR 865



 Score =  115 bits (289), Expect = 8e-30
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 55/231 (23%)

Query: 661 CPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVF---------------------- 698
           CP C G R   E L+V + G +I ++ ++++ +   V                       
Sbjct: 283 CPQCHGKRLKREALSVRFAGHDIGEIARMSLARLADVLRPVARGESPGAAAPVATRRASL 342

Query: 699 -----------AEQPPARRC---------------------LQVLQDIGLGYLRLGQPAT 726
                      A  P  RR                      +  L ++GLGYL L +   
Sbjct: 343 RQAAPGKGASHASAPDVRRTPNQSAEKRIAAQRIAHEMLERVTTLLELGLGYLSLDRSTP 402

Query: 727 ELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVV 786
            LS GE QR++LAT+++    G  +YVLDEP+ GLHP D + L++ L+ L  SG+S+ VV
Sbjct: 403 TLSPGELQRLRLATQIRSNLFGV-VYVLDEPSAGLHPADGEALVLALDTLKRSGNSLFVV 461

Query: 787 EHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKA 837
           EHD+ ++ ++DW++D+GP AG+ GG V+ SG P+ +     S TA +L  A
Sbjct: 462 EHDLDLMRRADWLVDVGPDAGEKGGLVLYSGPPEGLRHVAQSHTARYLFSA 512



 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 27/168 (16%)

Query: 5   PTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLY---------- 54
           P TP G++++ G   +NL N+    P   L   TGVSGSGKSSL    L           
Sbjct: 520 PRTPRGWLKLEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLVSQALVELVAAHLGHE 579

Query: 55  -AEAQRRYFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLS 113
              A+    E  A  A R    +    V  ++G+   V + Q+    + RS++ + T L 
Sbjct: 580 PPPAEEEEGEEPAALASRTSGHI----VQGMEGIRRLVRVDQKPIGRTPRSNLATYTGLF 635

Query: 114 SSIRMLY-----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRV 156
             +R L+     ++A  + PG+       FS N  +G CP C G G V
Sbjct: 636 DHVRKLFAGTRAAKARRFDPGR-------FSFNVAKGRCPTCEGEGFV 676