Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 886 a.a., Excinuclease ABC subunit A paralog of unknown function from Sphingobium sp. HT1-2

 Score = 1136 bits (2939), Expect = 0.0
 Identities = 570/869 (65%), Positives = 672/869 (77%), Gaps = 36/869 (4%)

Query: 6   TTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESV 65
           T P   +++RGAR++NLKN+DVD+PR+A VVFTG+SGSGKSSLAF TLYAEAQRRY ESV
Sbjct: 18  TGPPACVQIRGARQNNLKNVDVDVPRNAFVVFTGISGSGKSSLAFGTLYAEAQRRYLESV 77

Query: 66  APYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGH 125
           APYARRLIDQ GVP+VDAIDGLPPAVALQQQRG+ +ARSSVGSVTTLSS +RMLYSR G 
Sbjct: 78  APYARRLIDQAGVPEVDAIDGLPPAVALQQQRGSANARSSVGSVTTLSSLVRMLYSRVGE 137

Query: 126 YPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMAWQ 185
           YP  Q MLYAEDFSPNT  GACP CHG+GRVY+ TE TMVPD +LTIRERAVAAWP AW 
Sbjct: 138 YPRHQPMLYAEDFSPNTVAGACPTCHGIGRVYDATEETMVPDDTLTIRERAVAAWPAAWH 197

Query: 186 GQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEP 245
           GQNLRDILV+LGY+VD PWRDLP+  RDWILFT+E PT PVYAGLTP QTR ALKR++EP
Sbjct: 198 GQNLRDILVSLGYNVDTPWRDLPKKDRDWILFTDEAPTVPVYAGLTPEQTRVALKRRMEP 257

Query: 246 SYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDI 305
           SYQGTF GARRYVL TF +++SA M+KRV+QY+    CP C GKRLKREAL+V FAGLDI
Sbjct: 258 SYQGTFTGARRYVLETFANTKSALMKKRVSQYIIGRDCPTCDGKRLKREALSVKFAGLDI 317

Query: 306 AELSHLSLQALAEVFRKVAAADYL------------------------------------ 329
           AE   L++  L ++   VA  +Y                                     
Sbjct: 318 AEFGDLTVLKLRDLLTPVAHGEYGGAAAVPKSHVLGKAARDAAVERRVAAGGSAHKSAPD 377

Query: 330 TQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQL 389
            ++   L+ EKR+AAQR+A EL+ER++ L+DLGLGY++L+RSTPTLSSGELQRLRLATQL
Sbjct: 378 VRRTPNLSDEKRIAAQRLASELIERLEPLIDLGLGYISLDRSTPTLSSGELQRLRLATQL 437

Query: 390 NSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVG 449
           +SQLFGVVYVLDEPSAGLHPAD EAL   L+RLK AGNS++VVEHDLD +RRA+WLVDVG
Sbjct: 438 SSQLFGVVYVLDEPSAGLHPADGEALLTILERLKAAGNSLFVVEHDLDVIRRAEWLVDVG 497

Query: 450 PAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAPVQATRAPRQARDWLKLEGITRNNLD 509
           P AGE GG +LYSGP  GLA V+ S TR YLF  P+++   PR A+ WL+LEGI RNNL 
Sbjct: 498 PGAGEKGGEVLYSGPIEGLANVETSITRRYLFAEPLRSEHTPRDAKAWLRLEGIRRNNLH 557

Query: 510 NLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEAQSLEDEPEQTS 569
            L   FP+GCFTAVTG+SGSGKSSLVSQAL ELV  HLG +    E +   L D  +  +
Sbjct: 558 GLDVEFPIGCFTAVTGVSGSGKSSLVSQALPELVTEHLGGSPVAEEEDIDPLLDVAQNDT 617

Query: 570 SGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQAKAQGFDAGRF 629
            G + AG+  ++RLV+VDQKPIGRTPRSNL+TY+G+FDHVR+ FA T  A+ + +  GRF
Sbjct: 618 EGRIVAGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDHVRRIFADTPLARRRHYSPGRF 677

Query: 630 SFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQGMNIAQVLQL 689
           SFNVA+GRC  CEGEG+V VELLF+PSV+APC TC G+RYNP+TL V W G NIAQVL+L
Sbjct: 678 SFNVAQGRCPVCEGEGYVMVELLFLPSVFAPCSTCHGSRYNPQTLEVEWNGRNIAQVLEL 737

Query: 690 TVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGA 749
           TVD A   FA +    R L VL++IGLGYLRLGQPATELSGGEAQRIKLATELQR  RG 
Sbjct: 738 TVDDACDFFAGEASVMRSLDVLREIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGN 797

Query: 750 TLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWVIDIGPGAGDA 809
           T+Y+LDEPT+GLHP D DRL+  L  LVE+G++VVVVEHDMR + Q+DW+ID+GPGAG+ 
Sbjct: 798 TIYILDEPTSGLHPSDGDRLMRHLRGLVEAGNTVVVVEHDMRAITQADWIIDLGPGAGED 857

Query: 810 GGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           GG++V SG P VVA    S TA +L  AL
Sbjct: 858 GGRIVASGVPGVVAEAEGSLTARYLKAAL 886



 Score = 60.8 bits (146), Expect = 3e-13
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 28/208 (13%)

Query: 4   SPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYF- 62
           +P     ++R+ G R +NL  +DV+ P       TGVSGSGKSSL    L  E    +  
Sbjct: 538 TPRDAKAWLRLEGIRRNNLHGLDVEFPIGCFTAVTGVSGSGKSSLVSQAL-PELVTEHLG 596

Query: 63  -------ESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSS 115
                  E + P      +      V  ++ +   V + Q+    + RS++ + + +   
Sbjct: 597 GSPVAEEEDIDPLLDVAQNDTEGRIVAGMEHVRRLVRVDQKPIGRTPRSNLSTYSGMFDH 656

Query: 116 IRMLY-----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD--- 167
           +R ++     +R  HY PG+       FS N  QG CP C G G  Y + E   +P    
Sbjct: 657 VRRIFADTPLARRRHYSPGR-------FSFNVAQGRCPVCEGEG--YVMVELLFLPSVFA 707

Query: 168 PSLTIRERAV--AAWPMAWQGQNLRDIL 193
           P  T            + W G+N+  +L
Sbjct: 708 PCSTCHGSRYNPQTLEVEWNGRNIAQVL 735