Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 944 a.a., excinuclease (uvrABC system protein A) from Pseudomonas putida KT2440

 Score =  496 bits (1276), Expect = e-144
 Identities = 276/706 (39%), Positives = 407/706 (57%), Gaps = 39/706 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM--AWQGQNLRDILVT 195
           FS N P GACP C GLG V +  +   + +  LT+ E A+  W     +  Q L  +   
Sbjct: 268 FSFNNPAGACPTCDGLG-VKQFFDTKRLVNTELTLAEGAIRGWDRRNVYYFQMLGSLAAH 326

Query: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGAR 255
            G+ ++ P+ +L    +  IL      +            R  + ++  P     F G  
Sbjct: 327 YGFSLEEPFGELSAEHQKVIL----QGSGKQSVDFKYLNDRGDIVKRSHP-----FEGIV 377

Query: 256 RYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQA 315
             +   +  ++SA +R+ +A+++    CP C+G RL+REA  V      +  +++L +  
Sbjct: 378 PNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGE 437

Query: 316 LAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTL 375
            +  F ++     LT ++ E+       A +I KE+ ER+  L+++GL YL L+RS  TL
Sbjct: 438 ASNYFGQLT----LTGRRGEI-------AAKILKEICERLQFLVNVGLDYLTLDRSADTL 486

Query: 376 SSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHD 435
           S GE QR+RLA+Q+ + L GV+Y+LDEPS GLH  D++ L   L  L+  GN+V VVEHD
Sbjct: 487 SGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNTVIVVEHD 546

Query: 436 LDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAP---VQATRAPR 492
            D +R AD++VD+GP AG HGG I+  G P  + +   S T  YL       V A R PR
Sbjct: 547 EDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKKIVVPAKRTPR 606

Query: 493 QARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQ 552
             +  LKL+G   NNL N+    P+G  T VTG+SGSGKS+L++  L  L    L  A  
Sbjct: 607 NKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYPLAATALNGAS- 665

Query: 553 RSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKC 612
                  SLE  P  +  G     L  + ++V +DQ PIGRTPRSN ATYTG+F  +R+ 
Sbjct: 666 -------SLEAAPHSSMDG-----LQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIREL 713

Query: 613 FAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPE 672
           F+   +++++G+  GRFSFNV  GRC  C+G+G + VE+ F+P +Y PC  C+  RYN E
Sbjct: 714 FSGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRE 773

Query: 673 TLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGE 732
           TL + ++G NI +VL++T++ A + F   P   R LQ L D+GL Y++LGQ AT LSGGE
Sbjct: 774 TLEIKYKGKNIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGE 833

Query: 733 AQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRV 792
           AQR+KL+ EL +   G TLY+LDEPT GLH  DI +LL  L+RL + G++VVV+EH++ V
Sbjct: 834 AQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDV 893

Query: 793 VAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           +  +DW++D+GP  G  GG+++  GTP+ ++    S T  +L   L
Sbjct: 894 IKTADWLVDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLL 939



 Score =  135 bits (341), Expect = 8e-36
 Identities = 63/113 (55%), Positives = 88/113 (77%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I +RGAR HNLKNID+ +PRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
            +  +  PDVD I+GL PA++++Q+  + + RS+VG++T +   +R+LY+R G
Sbjct: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG 116



 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           ++++GAR +NL+N+D+++P   L   TGVSGSGKS+L  +TLY  A      + A     
Sbjct: 612 LKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYPLA------ATALNGAS 665

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SRAGHY 126
            ++      +D +  L   V + Q     + RS+  + T + + IR L+     SR+  Y
Sbjct: 666 SLEAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSGVPESRSRGY 725

Query: 127 PPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
            PG+       FS N   G C  C G G +    E   +PD
Sbjct: 726 GPGR-------FSFNVKGGRCEACQGDGLI--KVEMHFLPD 757



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSE 555
           D + + G   +NL N+    P      +TG+SGSGKSSL    L          +     
Sbjct: 2   DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61

Query: 556 PEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
            +  S+ ++P+  +       +  +   + ++QK     PRS + T T ++D++R  +A
Sbjct: 62  RQFLSMMEKPDVDT-------IEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYA 113