Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score =  518 bits (1333), Expect = e-151
 Identities = 284/712 (39%), Positives = 414/712 (58%), Gaps = 50/712 (7%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPMA---WQGQNLRDILV 194
           FS N P GACP C GLG         ++P+P L++RE A+A W  +   +  Q L+ +  
Sbjct: 267 FSFNNPFGACPACDGLGVKLYFDPELVIPNPGLSLREGAIAPWAGSTSQYYVQTLQGLAE 326

Query: 195 TLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQG----- 249
              + +D PW  LP+  R+ IL                    E ++   E  ++G     
Sbjct: 327 HYRFKLDTPWEKLPERAREVILH---------------GSGNEEIRIAYEDGFRGYHTEK 371

Query: 250 TFMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELS 309
           +F G    +   +  + S+ +R+ ++++   + C  C G RLK EALAV   GL I+E +
Sbjct: 372 SFEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEALAVKVRGLHISEAT 431

Query: 310 HLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALE 369
             S+         + A D+     + L  + +  A+RI +E+ +R+  L+D+GL YL + 
Sbjct: 432 EFSI---------LNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLEYLTMG 482

Query: 370 RSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSV 429
           R + +LS GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D++ L   L+RL+  GN+V
Sbjct: 483 RGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRDIGNTV 542

Query: 430 YVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDA---PVQ 486
            VVEHD D +R AD+LVD+GP AG HGG ++  G PA +     S T  YL      P+ 
Sbjct: 543 IVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQDHIPLP 602

Query: 487 ATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAH 546
           A R P   +  L L G   NNL N+ A  PLG  T VTG+SG GKS+LV + L + +   
Sbjct: 603 ALRRPGNGKR-LSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALSRR 661

Query: 547 LGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLF 606
           L  A ++  P  +                G+  + +++ +DQ PIGRTPRSN ATYTG F
Sbjct: 662 LMGAREQPSPFDRI--------------DGMEYLDKIIDIDQSPIGRTPRSNPATYTGAF 707

Query: 607 DHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQG 666
             +R  F    ++K +G+  GRFSFNV  GRC  C+G+G + +E+ F+P VY  C  C+G
Sbjct: 708 SPIRDWFTELPESKVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKG 767

Query: 667 ARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPAT 726
            RYN ETL ++++G +IA VL +TV++A   F   P  R  +  LQ +GL Y+ LGQ AT
Sbjct: 768 KRYNRETLEITFRGKSIADVLDMTVEEAADFFKAVPAIRDKMVTLQRVGLDYIHLGQQAT 827

Query: 727 ELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVV 786
            LSGGEAQR+KLA EL + + G TLY+LDEPT GLH +D+ +LL  +  LV++G++V+V+
Sbjct: 828 TLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVI 887

Query: 787 EHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           EH++ V+  +DW++D+GP  GD GG++V +GTP+ VAAC +S T  +LA  L
Sbjct: 888 EHNLEVIKTADWIVDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYLAPIL 939



 Score =  148 bits (373), Expect = 2e-39
 Identities = 70/116 (60%), Positives = 96/116 (82%)

Query: 9   SGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPY 68
           SGFIRVRGAREHNLKNIDVD+PRD LVV TG+SGSGKSSLAF T+YAE QRRY ES++ Y
Sbjct: 2   SGFIRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 61

Query: 69  ARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
           AR+ ++ +  PDV++I+GL PA++++Q+  + + RS+VG+VT +   +R+L++R G
Sbjct: 62  ARQFLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVG 117



 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 25/147 (17%)

Query: 16  GAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYF---ESVAPYARRL 72
           GAR +NLKN+D  IP   L   TGVSG GKS+L   TLY    RR     E  +P+ R  
Sbjct: 617 GARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALSRRLMGAREQPSPFDR-- 674

Query: 73  IDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SRAGHYP 127
                   +D ++ L   + + Q     + RS+  + T   S IR  +     S+   Y 
Sbjct: 675 --------IDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELPESKVRGYK 726

Query: 128 PGQAMLYAEDFSPNTPQGACPQCHGLG 154
           PG+       FS N   G C  C G G
Sbjct: 727 PGR-------FSFNVKGGRCEACQGDG 746



 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 497 WLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEP 556
           ++++ G   +NL N+    P      +TG+SGSGKSSL    +         + E  S  
Sbjct: 4   FIRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTI--YAEGQRRYVESLSAY 61

Query: 557 EAQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
             Q LE   +P+  S       +  +   + ++QK   + PRS + T T ++D++R  +A
Sbjct: 62  ARQFLELMQKPDVES-------IEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWA 114