Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 941 a.a., excinuclease ABC, A subunit from Kangiella aquimarina DSM 16071

 Score =  497 bits (1279), Expect = e-144
 Identities = 268/706 (37%), Positives = 407/706 (57%), Gaps = 39/706 (5%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM--AWQGQNLRDILVT 195
           FS N P GACP C GLG         ++ +  +++   A+  W     +    L+ +   
Sbjct: 269 FSFNNPAGACPTCDGLGIDQFFDPDKIITNEDISLAGGAIRGWDRRNVYYFHMLKSLAKH 328

Query: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMGAR 255
             +D++ PW  L +  +D +L+          +G T      +  R  +   +  F G  
Sbjct: 329 YKFDIEAPWSSLSKKIQDVVLYG---------SGKTQIDFEYSNDRGDKYQRKHRFEGII 379

Query: 256 RYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSLQA 315
             +   +  ++S  +R+ + +YM   +C  C G RL  ++  V   G  + +++H S++ 
Sbjct: 380 PNMQRRYHETESGAVREELQKYMTTQSCKACGGTRLNEDSRNVFIDGTSLPQVTHWSIEQ 439

Query: 316 LAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTPTL 375
             + F  +     L  ++ E+       A ++ KE+ ER+  L+++GL YL LERS  TL
Sbjct: 440 AHDYFSTLN----LPGKRGEI-------ASKVLKEIGERLSFLVNVGLDYLTLERSADTL 488

Query: 376 SSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHD 435
           S GE QR+RLA+Q+ + L GV+Y+LDEPS GLH  D++ L + L  L+  GN+V VVEHD
Sbjct: 489 SGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLQTLTHLRDLGNTVIVVEHD 548

Query: 436 LDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL---FDAPVQATRAPR 492
            D +R AD++VD+GP AG HGG I+  G  A + + + S T  YL       V   R P 
Sbjct: 549 EDAIRAADFIVDIGPGAGVHGGEIVAKGTLADIKKAKGSLTAQYLTGKLKIEVPEKRTPV 608

Query: 493 QARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQ 552
            A+  +K+ G T NNL+++    P+G  T +TG+SGSGKS+L++  L  +V   +  +  
Sbjct: 609 DAKKTIKVLGATGNNLNDVDLEIPVGLLTCITGVSGSGKSTLINDTLYPIVARDINRSSL 668

Query: 553 RSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKC 612
           + +P  +                GL +I ++V +DQ PIGRTPRSN ATYTG+F  +R+ 
Sbjct: 669 QPKPYKEI--------------QGLDNIDKVVDIDQSPIGRTPRSNPATYTGIFTPIREL 714

Query: 613 FAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPE 672
           FA T++++ +G+  GRFSFNV  GRC  C+G+G + VE+ F+P VY  C  C+G RYN E
Sbjct: 715 FAGTQESRTRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVACDVCKGKRYNRE 774

Query: 673 TLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGE 732
           TL + ++G NI +VL LTV+ A + F   P   R LQ L D+GL Y+ LGQ AT LSGGE
Sbjct: 775 TLEILYKGKNINEVLDLTVEDAREFFDAIPAVARKLQTLIDVGLSYITLGQAATTLSGGE 834

Query: 733 AQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRV 792
           AQR+KL+ EL +   G TLY+LDEPT GLH  D+++LL  L+RL + G++VVV+EH++ V
Sbjct: 835 AQRVKLSRELSKRDTGQTLYILDEPTTGLHFHDVNQLLKVLHRLRDHGNTVVVIEHNLDV 894

Query: 793 VAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           +  +DW++D+GP  G  GG+++ +GTP+ VA    S T  +L   L
Sbjct: 895 IKTADWIVDLGPEGGSKGGQIIATGTPEDVAKIKKSYTGKYLKPML 940



 Score =  131 bits (329), Expect = 2e-34
 Identities = 65/130 (50%), Positives = 94/130 (72%), Gaps = 2/130 (1%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I +RGA+ HNLKNID+ +PRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 4   IDIRGAKTHNLKNIDLVLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 72  LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG--HYPPG 129
            +  +  PDV+ I+GL PA++++Q+  + + RS+VG++T +   +R+L++R G  H P  
Sbjct: 64  FLSLMEKPDVEHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGTPHCPTH 123

Query: 130 QAMLYAEDFS 139
              L A+  S
Sbjct: 124 HLPLEAQTIS 133



 Score = 63.5 bits (153), Expect = 5e-14
 Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 4   SPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFE 63
           +P      I+V GA  +NL ++D++IP   L   TGVSGSGKS+L   TLY    R    
Sbjct: 606 TPVDAKKTIKVLGATGNNLNDVDLEIPVGLLTCITGVSGSGKSTLINDTLYPIVAR---- 661

Query: 64  SVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY--- 120
                 R  +      ++  +D +   V + Q     + RS+  + T + + IR L+   
Sbjct: 662 ---DINRSSLQPKPYKEIQGLDNIDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGT 718

Query: 121 --SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
             SR   Y PG+       FS N   G C  C G G +    E   +PD
Sbjct: 719 QESRTRGYKPGR-------FSFNVKGGRCEACQGDGVI--KVEMHFLPD 758



 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 496 DWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSE 555
           D + + G   +NL N+    P      +TG+SGSGKSSL    L          +     
Sbjct: 2   DNIDIRGAKTHNLKNIDLVLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61

Query: 556 PEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
            +  SL ++P+     H+      +   + ++QK     PRS + T T ++D++R  FA
Sbjct: 62  RQFLSLMEKPDVE---HIE----GLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFA 113