Pairwise Alignments
Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440
Subject, 1495 a.a., Excinuclease ATPase subunit from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 370 bits (951), Expect = e-106
Identities = 250/804 (31%), Positives = 399/804 (49%), Gaps = 99/804 (12%)
Query: 12 IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
+R+ A ++NLKN+ +D+P + L+V TG+SGSGKSSLA + E R + ES+ Y ++
Sbjct: 1 MRITDAHQNNLKNVSLDLPENRLIVVTGLSGSGKSSLAMGVIANEGYRYFLESLPAYNQQ 60
Query: 72 LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGHYPPGQA 131
+ +V+ I LPP + ++Q + S ++ G+++ L+ R+L++R G+
Sbjct: 61 HAQAIPTAEVEHISALPPVIKVEQSKRFQSINATFGTLSELTPLFRVLFARYA----GEE 116
Query: 132 MLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW-PMAW------ 184
+ FS N P+GAC C G+G + +V D + T+RE A+ P +
Sbjct: 117 TMSKSLFSFNHPKGACEHCRGIGEAEYIDIHKLVGDENKTLREGAITTTLPNGYIVYSQV 176
Query: 185 QGQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTR---EALKR 241
+ L + G+ VD+PW+DL + Q+D IL+ + V+ G ++R E K
Sbjct: 177 TVEELNKVCAAHGFSVDVPWKDLSKEQQDVILYGSDR--IKVFYGKHSLESRLRWEGFKA 234
Query: 242 KLEPSYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFA 301
K P +G + G ++ + +++ CP C G R+K E L +
Sbjct: 235 K--PREEGYYKG----IIPIMSDILRLDRNVSILRFVSAKICPSCHGARIKAEHLRYRWK 288
Query: 302 GLDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDL 361
GL+ E LSLQ L Y Q L+ +++ ++ +LL+ L+ L
Sbjct: 289 GLNFQEWMDLSLQQL-----------YDRLQAQSLSGGEKVLVDKLCTQLLD----LIRL 333
Query: 362 GLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQR 421
G+ + L S+ +SSG+ QR++L Q+NS L G++YV DEPS GL A + L R
Sbjct: 334 GMEHYQLSTSSMDISSGDGQRIKLIKQVNSSLQGILYVFDEPSIGLPAAYQQHLRHIFDR 393
Query: 422 LKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLF 481
L GN+V VVEHDL+ ++ ADW+V++ GP AG+
Sbjct: 394 LILRGNTVMVVEHDLNFIQSADWVVEL--------------GPKAGIEGG---------- 429
Query: 482 DAPVQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLE 541
E I ++D+ A P T +T I + S A +
Sbjct: 430 -------------------EVIFNGSIDSFLTADPAKSPT-LTAIQNQNEPSRKPAASQQ 469
Query: 542 LVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSI-----KRLVQVDQKPIGRTPR 596
+ +P+ Q+L +T G + + + + V +PIG+TPR
Sbjct: 470 V---------NAFQPQPQTLSVVSRKT--GKLLETITAFCDQQGLTFLTVTDQPIGKTPR 518
Query: 597 SNLATYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPS 656
SN +TYTGL D +R A T AK+ FSFN GRC NCEG G +++ + M +
Sbjct: 519 SNPSTYTGLADGIRDLLAKTSTAKSLKLAKSAFSFNNKSGRCPNCEGAGVITLSMSVMGN 578
Query: 657 VYAPCPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGL 716
+ CP CQG R+ P+ L VSWQG NIA++ L++ +A + FAE+ L ++ +GL
Sbjct: 579 INQVCPVCQGKRFKPDVLKVSWQGKNIAEIYDLSIREAAEFFAEEKKLANILALMLQLGL 638
Query: 717 GYLRLGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRL 776
GY++LGQP+ LSGGEAQRIKL + ++ T+ +L+EP+ GLH Q++ +L+ LN+L
Sbjct: 639 GYIKLGQPSNTLSGGEAQRIKLTKHFAKPSK-KTVLLLEEPSIGLHQQNVQQLMDALNQL 697
Query: 777 VESGHSVVVVEHDMRVVAQSD-WV 799
+ +V E+ +Q D WV
Sbjct: 698 KKQTAGIVCFENHQLFQSQCDVWV 721
Score = 287 bits (734), Expect = 4e-81
Identities = 237/802 (29%), Positives = 358/802 (44%), Gaps = 65/802 (8%)
Query: 1 MPPSPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRR 60
+P P I + GAR H LK+I ++ P++ L V TG+SGSGKSSL TL+ +
Sbjct: 732 IPLPPAQRRDIIAIHGARTHALKDISLEFPKEHLSVVTGISGSGKSSLVIDTLHGFGLQE 791
Query: 61 YFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY 120
+ + Y + + +VD I+GL P++ + ++ + S RS V T ++R +
Sbjct: 792 MTKQFSSYQQSRVGVNFQLEVDYIEGLTPSICITRKEKSFSERSDVAQQTDFDKTLRFAF 851
Query: 121 SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW 180
SR Y A FS N G C C G+G+ MV D L+I +
Sbjct: 852 SRKAQYTGLDWS--ASHFSNNHELGKCGICDGVGQELLPDLDKMVLDGGLSINDGLFEHH 909
Query: 181 P-MAWQGQNLRDILVTLG-------YDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTP 232
+A+ GQ + LG +D++ P+ +L Q+D I E T
Sbjct: 910 KGLAYYGQASGQYMAVLGEVGKAYGFDLNTPFNELTPVQKDVIFKGVEGKTWEATWKFR- 968
Query: 233 AQTREALKRKLEPSYQGTFMGARRYVLHTFM--HSQSAQMRKRVAQYMHPSTCPLCQGKR 290
+TRE ++ + + G F +Y++ + Q K + Y + C CQG
Sbjct: 969 TKTREGTQQ-VNMKWSGLF----KYLMDEYFLTRKNKYQPLKSLLSY---NECSHCQGSG 1020
Query: 291 LKREALAVTFAGLDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKE 350
L+ E LAV G I L + + L + V A + + QQ +
Sbjct: 1021 LQPERLAVQIGGNSIHALKSMDFKKLDHWLKNVGATESIDQQ----------LIGNVKAN 1070
Query: 351 LLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPA 410
L + L + +L L R + TLS GE QR+ L QLNS L G+ Y+LDEPSAGL
Sbjct: 1071 LANTLKRAKQLHIDHLQLNRKSATLSGGEQQRVTLIKQLNSPLKGITYLLDEPSAGLSAD 1130
Query: 411 DSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAE 470
+ L + L+ L + GN+V V+EH+ + M A+ LV++GP AG+ GG I + G PA E
Sbjct: 1131 NIPDLVQLLRELVEKGNTVIVIEHNKEIMLAAEKLVEIGPQAGQEGGYITFHGSPAAFLE 1190
Query: 471 VQQSCTRTYLFDAPVQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSG 530
S +L T A + L+ + R+ L S +G TA+TG SG G
Sbjct: 1191 RPDS--HPFLKRPAQPLTLA--TGNQTILLKDLARHTLVKKSLEVSVGGITAITGKSGIG 1246
Query: 531 KSSLVSQALLELVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKP 590
K++LV L+ + ++ P + P+ S + K
Sbjct: 1247 KTTLVKDVLIPSI--------EQEHPVNCAAITWPKAYSGAQ------------YFEPKK 1286
Query: 591 IGRTPRSNLATYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVE 650
+ R+ L Y L + K F +K G A FS+ +C NC+G G VS
Sbjct: 1287 LQAHNRTLLVDYLDLLKDICKVF-----SKETGRKARDFSYKNKASQCPNCKGAGVVSTS 1341
Query: 651 LLFMPSVYAPCPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPA---RRC 707
L + C C G RY L G++IA+VL L+V + A+ A
Sbjct: 1342 LDVAANHIETCEVCHGQRYQANLLEYRVGGLHIAEVLALSVRELRSWLADHQVATSRETF 1401
Query: 708 LQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDID 767
+Q L IGL +LRL Q LS GE QR+ L L+ R L +LDEP+ GLH DID
Sbjct: 1402 IQQLDAIGLAHLRLDQAVKSLSSGEKQRLLLLHWLKSKTRD-QLLILDEPSTGLHYADID 1460
Query: 768 RLLVQLNRLVESGHSVVVVEHD 789
LL ++ + + ++V++H+
Sbjct: 1461 -LLFEILSSLSRDNDILVIDHN 1481
Score = 118 bits (296), Expect = 2e-30
Identities = 105/363 (28%), Positives = 152/363 (41%), Gaps = 62/363 (17%)
Query: 283 CPLCQGKRLKREALAVTFAGLDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRL 342
CP+CQGKR K + L V++ G +IAE+ LS++ AE F + EK+L
Sbjct: 583 CPVCQGKRFKPDVLKVSWQGKNIAEIYDLSIREAAEFFAE----------------EKKL 626
Query: 343 AAQRIAKELLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDE 402
A + +L LGLGY+ L + + TLS GE QR++L V +L+E
Sbjct: 627 A---------NILALMLQLGLGYIKLGQPSNTLSGGEAQRIKLTKHFAKPSKKTVLLLEE 677
Query: 403 PSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYS 462
PS GLH + + L +AL +LK+ + E+ + D VD AA
Sbjct: 678 PSIGLHQQNVQQLMDALNQLKKQTAGIVCFENHQLFQSQCDVWVDNALAA---------- 727
Query: 463 GPPAGLAEVQQSCTRTYLFDAPVQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTA 522
P P Q RD + + G + L ++S FP +
Sbjct: 728 --------------------QPTAIPLPPAQRRDIIAIHGARTHALKDISLEFPKEHLSV 767
Query: 523 VTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKR 582
VTGISGSGKSSLV L G L ++ QS Q ++ SI
Sbjct: 768 VTGISGSGKSSLVIDT---LHGFGLQEMTKQFSSYQQSRVGVNFQLEVDYIEGLTPSI-- 822
Query: 583 LVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCE 642
+ +K + RS++A T +R F+ Q + A FS N G+C C+
Sbjct: 823 --CITRKEKSFSERSDVAQQTDFDKTLRFAFSRKAQYTGLDWSASHFSNNHELGKCGICD 880
Query: 643 GEG 645
G G
Sbjct: 881 GVG 883
Score = 103 bits (258), Expect = 6e-26
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 661 CPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPA--------RRCLQVLQ 712
CP+C GAR E L W+G+N + + L++ Q Q + + C Q+L
Sbjct: 270 CPSCHGARIKAEHLRYRWKGLNFQEWMDLSLQQLYDRLQAQSLSGGEKVLVDKLCTQLLD 329
Query: 713 DIGLG--YLRLGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLL 770
I LG + +L + ++S G+ QRIKL ++ +G LYV DEP+ GL L
Sbjct: 330 LIRLGMEHYQLSTSSMDISSGDGQRIKLIKQVNSSLQGI-LYVFDEPSIGLPAAYQQHLR 388
Query: 771 VQLNRLVESGHSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRT 830
+RL+ G++V+VVEHD+ + +DWV+++GP AG GG+V+ +G+ +++
Sbjct: 389 HIFDRLILRGNTVMVVEHDLNFIQSADWVVELGPKAGIEGGEVIFNGSIDSFLTADPAKS 448
Query: 831 ATFLA 835
T A
Sbjct: 449 PTLTA 453
Score = 92.4 bits (228), Expect = 2e-22
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 658 YAPCPTCQGARYNPETLAVSWQGMNIAQVLQL----------------TVDQALQVFAEQ 701
Y C CQG+ PE LAV G +I + + ++DQ L + +
Sbjct: 1010 YNECSHCQGSGLQPERLAVQIGGNSIHALKSMDFKKLDHWLKNVGATESIDQQL-IGNVK 1068
Query: 702 PPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGL 761
L+ + + + +L+L + + LSGGE QR+ L +L +G T Y+LDEP+ GL
Sbjct: 1069 ANLANTLKRAKQLHIDHLQLNRKSATLSGGEQQRVTLIKQLNSPLKGIT-YLLDEPSAGL 1127
Query: 762 HPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQV 821
+I L+ L LVE G++V+V+EH+ ++ ++ +++IGP AG GG + G+P
Sbjct: 1128 SADNIPDLVQLLRELVEKGNTVIVIEHNKEIMLAAEKLVEIGPQAGQEGGYITFHGSPAA 1187
Query: 822 VAACTDS 828
DS
Sbjct: 1188 FLERPDS 1194