Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 938 a.a., uvrA paralog in Bacteroidetes (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  438 bits (1127), Expect = e-127
 Identities = 250/710 (35%), Positives = 384/710 (54%), Gaps = 66/710 (9%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW----PMAWQGQNLRDIL 193
           FS N P GAC  C G G V  +    ++PD SL+I E A+A W       W    +++  
Sbjct: 283 FSFNNPYGACKTCEGFGSVLGIDPDLVIPDKSLSIYEGAIAPWRGETTKKWAAPLIKNG- 341

Query: 194 VTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGT--F 251
           +   + +  P+ +L +A +D I                               ++G   F
Sbjct: 342 IHFDFPIHRPYEELDEAHKDLI-------------------------------WKGNSYF 370

Query: 252 MGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHL 311
            G   +  H    +   Q R  ++++   +TCP C+G RL+++A  V   G  I ++  +
Sbjct: 371 KGLDAFFEHLQSKTHKIQYRVMLSRFRGRTTCPDCKGTRLRKDAAYVKVNGHSITDIVLM 430

Query: 312 SLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERS 371
            +      F+ +           +LT  +   A R+ KE+L R++ +  +GLGYL L R 
Sbjct: 431 PIDRALAFFQNI-----------QLTEAEEKTANRLLKEILNRLEYIDKVGLGYLTLNRL 479

Query: 372 TPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYV 431
           T +LS GE QR++LAT L S L G +Y+LDEPS GLHP DS+ L   L+ L+  GN+V V
Sbjct: 480 TSSLSGGEYQRIKLATSLGSALVGSMYILDEPSIGLHPRDSDRLISVLKSLRDMGNTVIV 539

Query: 432 VEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLF-DAPVQATRA 490
           VEH+   M+ AD +VD+GP AG +GG +++ G    L    ++ T  YL  +  +   + 
Sbjct: 540 VEHEEKIMKAADEIVDIGPEAGVNGGKLVFQGKLDELLAHGETYTAKYLKGEEKIDIKQG 599

Query: 491 PRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHA 550
            R+ +D + + G   NNL N++   PL   T +TG+SGSGKS+L+ + L   +G  LG  
Sbjct: 600 NRKWKDKILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLYPALGKILG-- 657

Query: 551 EQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVR 610
                    ++ DE  +     +     SI ++  VDQ PIG++ RSN  TY   +D +R
Sbjct: 658 ---------TVIDETGKFDK--LEGDYKSISQVEFVDQNPIGKSSRSNPVTYVKAYDAIR 706

Query: 611 KCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYN 670
             FA    AK +G+    FSFNV  GRC  C+GEG   +E+ FM  ++  C +C+G R+ 
Sbjct: 707 SLFADQPVAKQRGYKPAFFSFNVDGGRCEACQGEGTQKIEMQFMADIFLTCESCKGKRFK 766

Query: 671 PETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSG 730
            E L ++++  NIA VL++T+D+A++ F  +      LQ LQ++GLGY+ LGQ +  LSG
Sbjct: 767 NEILDITYKDKNIADVLEMTIDEAMEFFQGKNAIISRLQPLQEVGLGYIGLGQSSNTLSG 826

Query: 731 GEAQRIKLATELQR---MARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVE 787
           GEAQR+KLA+ L +    A+   L++ DEPT GLH  DI +LL  +N L+E GHSV+++E
Sbjct: 827 GEAQRVKLASFLGKGGNKAKDHVLFIFDEPTTGLHFHDIKKLLYSINALIEEGHSVIIIE 886

Query: 788 HDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKA 837
           H+  V+  +DWVID+GP  G+ GG V   GTP+ +    D+ TA +L ++
Sbjct: 887 HNTEVIKSADWVIDLGPEGGERGGNVTFEGTPEALREVKDNYTAKYLRES 936



 Score =  122 bits (305), Expect = 1e-31
 Identities = 59/117 (50%), Positives = 86/117 (73%)

Query: 8   PSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAP 67
           P  +I ++ AR +NLKN+ V IPR+ LVV TG+SGSGKSSLAF TL+AE QR Y ES++ 
Sbjct: 17  PKSYIIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYVESLSS 76

Query: 68  YARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
           YAR+ + ++  PDV+ I G+ PA+A+QQ+  T + RS+VG+ T +   +++L+SR G
Sbjct: 77  YARQFLGRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFSRIG 133



 Score = 59.3 bits (142), Expect = 1e-12
 Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 12  IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
           I + GARE+NLKNI+V IP + L V TGVSGSGKS+L    LY         ++      
Sbjct: 607 ILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLY--------PALGKILGT 658

Query: 72  LIDQVGVPDVDAIDGLPPAVA-LQQQRGTPSARSSVGSVTTLSSSIRMLYSRAGHYPPGQ 130
           +ID+ G    D ++G   +++ ++     P  +SS  +  T   +   + S     P  +
Sbjct: 659 VIDETG--KFDKLEGDYKSISQVEFVDQNPIGKSSRSNPVTYVKAYDAIRSLFADQPVAK 716

Query: 131 AMLYAED-FSPNTPQGACPQCHGLG 154
              Y    FS N   G C  C G G
Sbjct: 717 QRGYKPAFFSFNVDGGRCEACQGEG 741



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 495 RDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRS 554
           + ++ ++    NNL NLS A P      VTG+SGSGKSSL    L         + E  S
Sbjct: 18  KSYIIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTL--FAEGQRMYVESLS 75

Query: 555 EPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFA 614
               Q L    E+    ++      +   + + QK   + PRS + T T ++D+++  F+
Sbjct: 76  SYARQFL-GRMEKPDVEYIK----GVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFS 130