Pairwise Alignments

Query, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440

Subject, 981 a.a., excinuclease ABC subunit UvrA from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  516 bits (1330), Expect = e-150
 Identities = 293/710 (41%), Positives = 417/710 (58%), Gaps = 44/710 (6%)

Query: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW---PMAWQGQNLRDILV 194
           FS N P GACP C GLG         ++PD   T+ + AVA W   P     Q L+ + +
Sbjct: 276 FSFNNPFGACPVCDGLGVKLAFDADLVIPDRDKTLHKGAVAPWARGPSPLYTQTLQSLSL 335

Query: 195 TLGYDVDIPWRDLP-QAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMG 253
             G+ +D PWRDLP QA +  +  T       VY          A K ++   ++G    
Sbjct: 336 HYGFSMDKPWRDLPAQAHKAILHGTGSEKIKFVYDD-------NARKYEVSKPFEGVLPN 388

Query: 254 ARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAGLDIAELSHLSL 313
             R     +  + SA +R+ +A+Y   + C  C GKRLK EALAV   G DIA++S LS+
Sbjct: 389 LER----RWRETDSAWVREELARYQSETPCDACHGKRLKPEALAVKVGGEDIADISTLSI 444

Query: 314 QALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDLGLGYLALERSTP 373
                 F  +   + LT++Q E+       A+RI KE+ +R+  L ++GL YL L RS+ 
Sbjct: 445 SKAYLWFSTLE--ENLTEKQMEI-------ARRILKEICDRLRFLNNVGLDYLNLSRSSG 495

Query: 374 TLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQRLKQAGNSVYVVE 433
           TLS GE QR+RLA+Q+ S L GV+YVLDEPS GLH  D+  L E+L+ L+  GNSV VVE
Sbjct: 496 TLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNTRLLESLKGLRDLGNSVLVVE 555

Query: 434 HDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL-----FDAPVQAT 488
           HD + +  AD+++D+GPAAG HGG +   G PA +    +S T  YL      + P +  
Sbjct: 556 HDEEAILTADYVIDMGPAAGVHGGQVCAEGTPAQVMANPKSLTGKYLTGEREIEIPAEGR 615

Query: 489 RAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLG 548
           R P   +  LK+ G + NNL +++   P+G FT +TG+SG GKS+   + L +     L 
Sbjct: 616 R-PINRKRMLKISGASGNNLKSVTGEIPVGVFTCITGVSGGGKSTFTIETLYKAAARRLN 674

Query: 549 HAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDH 608
           +A +   P      D  E         GL    +++ +DQ PIGRTPRSN ATYTG F  
Sbjct: 675 NASEAPAPF-----DRIE---------GLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGP 720

Query: 609 VRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGAR 668
           +R  +A   ++KA+G+  GRFSFNV  GRC  C+G+G + +E+ F+P VY  C  C+G R
Sbjct: 721 IRDWYAGLPESKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKR 780

Query: 669 YNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATEL 728
           YN ETL + ++G +I+ VL +TV++A   F   PP R  +  L+ +GLGY+++GQPAT L
Sbjct: 781 YNRETLEIVFKGKSISDVLDMTVEEAASFFKAVPPIRDKMLTLERVGLGYVKVGQPATTL 840

Query: 729 SGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEH 788
           SGGEAQR+KL+ EL + A G TLY+LDEPT GLH +D  +LL  L  LVE+G+++VV+EH
Sbjct: 841 SGGEAQRVKLSKELSKRATGRTLYILDEPTTGLHFEDTRKLLEVLQELVEAGNTIVVIEH 900

Query: 789 DMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
           ++ V+  +D+++D GP  GD GG++V  GTP+ VA    S T  +L + L
Sbjct: 901 NLDVIKVADYLLDFGPEGGDGGGEIVAVGTPEQVADNKASWTGKYLKEVL 950



 Score =  144 bits (364), Expect = 2e-38
 Identities = 68/119 (57%), Positives = 94/119 (78%)

Query: 6   TTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESV 65
           T    FIRVRGAREHNLK +D+DIPR+ LVV TG+SGSGKSSLAF T+YAE QRRY ES+
Sbjct: 2   TEKHNFIRVRGAREHNLKGVDLDIPREQLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESL 61

Query: 66  APYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG 124
           + YAR+ ++ +G PDVD I+GL PA++++Q+  + + RS+VG+VT +   +R+L++R G
Sbjct: 62  SAYARQFLELMGKPDVDLIEGLSPAISIEQKTTSKNPRSTVGTVTEIHDYMRLLWARVG 120



 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 74/291 (25%), Positives = 116/291 (39%), Gaps = 40/291 (13%)

Query: 5   PTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRY--- 61
           P      +++ GA  +NLK++  +IP       TGVSG GKS+    TLY  A RR    
Sbjct: 617 PINRKRMLKISGASGNNLKSVTGEIPVGVFTCITGVSGGGKSTFTIETLYKAAARRLNNA 676

Query: 62  FESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY- 120
            E+ AP+ R          ++ ++     + + Q     + RS+  + T     IR  Y 
Sbjct: 677 SEAPAPFDR----------IEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWYA 726

Query: 121 ----SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTI---- 172
               S+A  Y PG+       FS N   G C  C G G +    E   +PD  +T     
Sbjct: 727 GLPESKARGYGPGR-------FSFNVKGGRCEACQGDGVI--KIEMHFLPDVYVTCDVCK 777

Query: 173 -RERAVAAWPMAWQGQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLT 231
            +        + ++G+++ D+L     +    ++ +P   RD +L  E      V  G  
Sbjct: 778 GKRYNRETLEIVFKGKSISDVLDMTVEEAASFFKAVPPI-RDKMLTLERVGLGYVKVG-Q 835

Query: 232 PAQT---REALKRKLEPSYQGTFMGARRYVLH---TFMHSQSAQMRKRVAQ 276
           PA T    EA + KL         G   Y+L    T +H +  +    V Q
Sbjct: 836 PATTLSGGEAQRVKLSKELSKRATGRTLYILDEPTTGLHFEDTRKLLEVLQ 886



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 493 QARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAE- 551
           +  +++++ G   +NL  +    P      +TG+SGSGKSSL    +         +AE 
Sbjct: 3   EKHNFIRVRGAREHNLKGVDLDIPREQLVVMTGLSGSGKSSLAFDTI---------YAEG 53

Query: 552 QRSEPEAQSLEDEPEQTSSGHVSAGL-GSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVR 610
           QR   E+ S          G     L   +   + ++QK   + PRS + T T + D++R
Sbjct: 54  QRRYVESLSAYARQFLELMGKPDVDLIEGLSPAISIEQKTTSKNPRSTVGTVTEIHDYMR 113

Query: 611 KCFA 614
             +A
Sbjct: 114 LLWA 117