Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  115 bits (289), Expect = 3e-31
 Identities = 64/153 (41%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 12  VQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAKG 71
           V  LY +H GWL  WL R +     A DL+ DTF+RLL R        EPRA L  IAKG
Sbjct: 12  VGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRD-ELRAPREPRAFLMAIAKG 70

Query: 72  LVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVFLL 131
           L+ D +RR  +E+AYL  +  +P+ E PSPE + LILE L  ID +L  + ++ R  FL 
Sbjct: 71  LLFDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLY 130

Query: 132 SQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164
           ++LDG+ +A+IA++L VS+  +++ +      C
Sbjct: 131 NRLDGIGHAEIAQRLGVSVPRVRQYLAQGIRQC 163