Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  134 bits (336), Expect = 1e-36
 Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 5/166 (3%)

Query: 3   PAEPSLNLQVQTL---YTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGN 59
           PA P  +++ QTL   Y+EHHGWL GWL +KLG +  AADLAHD F+R+L     P    
Sbjct: 5   PAAPGDSVRQQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLML-AEPQQIK 63

Query: 60  EPRALLTHIAKGLVVDRWRRQDVERAYLEAIA-HLPQPEVPSPETRWLILETLYRIDAML 118
           EPRA L   A  L++D  RR+ +E+AY+EA+        +P P    + L+ L RI  ML
Sbjct: 64  EPRAFLATTAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEML 123

Query: 119 RDMPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164
             +PA+ R+ FLLS+LDGLTY++IA +L VS  T+K  + +A + C
Sbjct: 124 AGLPAKAREAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHC 169