Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 176 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  146 bits (368), Expect = 2e-40
 Identities = 77/162 (47%), Positives = 102/162 (62%)

Query: 7   SLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLT 66
           S++     LY  HHGWL G L R+L +  DAADLAHDTF+R+LSR          R+ L 
Sbjct: 6   SVSTSFTHLYGTHHGWLLGLLRRRLNDRWDAADLAHDTFIRILSRPPAETDPVRQRSYLA 65

Query: 67  HIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVR 126
            IA+GL +D WRR+ +ER +L+ +A  P+   PSPE R +I+ETL  +DAML  +P +V 
Sbjct: 66  TIARGLCIDHWRRRQLERTWLQTLAERPEALQPSPEQRAIIVETLVEVDAMLARLPKKVS 125

Query: 127 QVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE 168
           + FLL+QL GL Y QIAEQL V    +K+ M  A L C  +E
Sbjct: 126 EAFLLAQLHGLPYKQIAEQLGVGERMVKKYMAQALLHCAILE 167